BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0701900 Os03g0701900|AK068404
         (261 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G15200.3  | chr1:5228477-5231017 REVERSE LENGTH=471            101   4e-22

>AT1G15200.3 | chr1:5228477-5231017 REVERSE LENGTH=471
          Length = 470

 Score =  101 bits (252), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 55/134 (41%), Positives = 76/134 (56%), Gaps = 6/134 (4%)

Query: 129 MSLPEPLPREFPKDEDQSLVKRNKRMLGKLLVGTLEKFQQEDKKLSNTEAYMRRSEVQRK 188
            +LPEP PR  PK+ED  LV RN+RMLG LL GTLEKF++EDK+ S T+AY RR+   ++
Sbjct: 141 FALPEPAPRVLPKNEDPKLVNRNRRMLGNLL-GTLEKFRKEDKQRSGTDAYARRTAALQR 199

Query: 189 ADQKAXXXXXXXXXXXXXXAIEKRKRDMMXXXXXXXXXXXXXXXXXYMQWAEHHKKLSNF 248
           A++KA                EKR+RD+                  ++QW+EH KKLSNF
Sbjct: 200 AEEKAREESERLRLQERENLTEKRRRDLTLRARVAAKAEQKKLELLFLQWSEHQKKLSNF 259

Query: 249 L-----RLFLFLVQ 257
           +       ++F +Q
Sbjct: 260 ISDEIANCYVFHLQ 273



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.130    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,693,045
Number of extensions: 72961
Number of successful extensions: 219
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 1
Length of query: 261
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 164
Effective length of database: 8,447,217
Effective search space: 1385343588
Effective search space used: 1385343588
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)