BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0699200 Os03g0699200|AK066652
(604 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G14520.1 | chr5:4680789-4684330 REVERSE LENGTH=591 745 0.0
>AT5G14520.1 | chr5:4680789-4684330 REVERSE LENGTH=591
Length = 590
Score = 745 bits (1923), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/582 (62%), Positives = 451/582 (77%), Gaps = 20/582 (3%)
Query: 1 MPKHYRPAGKKKEGNAAKYITRTKAVKYLQISLATFRKLCILKGVFPRDPKKKVEGNHKT 60
MPKHYRP GKKKEGNAA+Y+TR++A+K+LQ++L FR+LCI+KG+FPR+PKKK++GNH T
Sbjct: 1 MPKHYRPTGKKKEGNAARYMTRSQALKHLQVNLNLFRRLCIVKGIFPREPKKKIKGNHHT 60
Query: 61 YYHMKDIAFLAHDPLIEKFREIXXXXXXXXXXXXXXXXDLADRLLNRPPTYKLDRLILER 120
YYH+KDIAFL H+PL+EKFREI +LA LL R PTYKLDRLI ER
Sbjct: 61 YYHVKDIAFLMHEPLLEKFREIKTYQKKVKKAKAKKNEELARLLLTRQPTYKLDRLIRER 120
Query: 121 YPTFVDALRDLDDCLTMVHLFAALPAVEGERVQVQRIHNCRRLSHEWQAYISRTHSLRKT 180
YPTF+DALRDLDDCLTMVHLFA LPA + E ++V+R+HNCRRL+HEWQAYISR+H+LRK
Sbjct: 121 YPTFIDALRDLDDCLTMVHLFAVLPASDRENLEVKRVHNCRRLTHEWQAYISRSHALRKV 180
Query: 181 FISVKGIYYQAEVQGQKITWLTPHALQQVLTDDVDFNVMLTFLEFYETLLGFINFKLYHS 240
F+SVKGIYYQAE++GQKITWLTPHA+QQV T+DVDF V+LTFLEFYETLL FINFKLYHS
Sbjct: 181 FVSVKGIYYQAEIEGQKITWLTPHAIQQVFTNDVDFGVLLTFLEFYETLLAFINFKLYHS 240
Query: 241 INVNYPPVLDPRLEALASELYALCRYMSSGRVPGNSEPAGLIEDKEGEDNKESSKTDESE 300
+NV YPP+LD RLEALA++LYAL RY+ + EP + + +S+ +ESE
Sbjct: 241 LNVKYPPILDSRLEALAADLYALSRYIDASSRGMAVEP-----KVDASFSSQSNDREESE 295
Query: 301 LRLAQLQHQLPTNEPGALMHLVQESTXXXXXXXXXKECRSLFKNLKFYLSREVPRESLLF 360
LRLAQLQHQLP++EPGALMHLV ++ + C+SLFK+LKF+LSREVPRESL
Sbjct: 296 LRLAQLQHQLPSSEPGALMHLVADNNKEVEEDEETRVCKSLFKDLKFFLSREVPRESLQL 355
Query: 361 IIPAFGGTVSWEGEGAPFDETDEDITHQIVDRPTQSHVFLSREYVQPQWIYDCVNARIIL 420
+I AFGG VSWEGEGAPF E DE ITH I+D+P+ H++LSR YVQPQWIYDCVNARIIL
Sbjct: 356 VITAFGGMVSWEGEGAPFKEDDESITHHIIDKPSAGHLYLSRVYVQPQWIYDCVNARIIL 415
Query: 421 PTEGYIVGRVPPPHLSPFVDNDAEGYIPEYAETIKRLQAAAQSQVLPLPSLGDEDME--- 477
PTE Y+VGR+PPPHLSPFVDN+AEGY+P+YAETIKRLQAAA+++VLPLP +G ED+E
Sbjct: 416 PTEKYLVGRIPPPHLSPFVDNEAEGYVPDYAETIKRLQAAARNEVLPLPGVGKEDLEDPQ 475
Query: 478 NSLVEAIIDRSESNEIADKKRKLEMLEKQYHDELRMEYEGKTFSNRTADNQPDVVDKSDT 537
N L ++ R+E E A K+K+ EKQYH+EL+ME G DVV
Sbjct: 476 NLLYAGVMSRAEEAEAAKNKKKMAAQEKQYHEELKMEINGSK----------DVVAPVLA 525
Query: 538 K-EADDHMEDSHKQAEKDAADISKTLMSRKQRGLLQAIEINQ 578
+ E ++ + D+ + A++D AD+ K LMSRK+R L A++I+Q
Sbjct: 526 EGEGEESVPDAMQIAQED-ADMPKVLMSRKKRKLYDAMKISQ 566
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.134 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,543,048
Number of extensions: 526787
Number of successful extensions: 1959
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1956
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 500
Effective length of database: 8,255,305
Effective search space: 4127652500
Effective search space used: 4127652500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 115 (48.9 bits)