BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0693000 Os03g0693000|J075066G24
(83 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G59650.1 | chr1:21920099-21922670 FORWARD LENGTH=493 134 7e-33
AT1G10410.1 | chr1:3416842-3419264 REVERSE LENGTH=486 130 1e-31
AT1G13970.1 | chr1:4779742-4781882 REVERSE LENGTH=505 108 5e-25
AT3G29180.1 | chr3:11149073-11151322 FORWARD LENGTH=514 105 7e-24
AT5G39430.1 | chr5:15775302-15777599 REVERSE LENGTH=512 101 6e-23
AT5G24990.1 | chr5:8610591-8611475 FORWARD LENGTH=295 48 1e-06
>AT1G59650.1 | chr1:21920099-21922670 FORWARD LENGTH=493
Length = 492
Score = 134 bits (338), Expect = 7e-33, Method: Composition-based stats.
Identities = 58/72 (80%), Positives = 63/72 (87%)
Query: 7 YLQGDNYFEVDIDMHRFSYISRKGFETFLDRLKICMLDVGLTIQGNKAEELPEQILCCVR 66
+ G+NYFE+DIDMHRFSYISRKGFE FLDRLK C+LDVGLTIQGNK EELPEQILCC+R
Sbjct: 414 FYSGENYFEIDIDMHRFSYISRKGFEAFLDRLKNCVLDVGLTIQGNKPEELPEQILCCIR 473
Query: 67 LNGIDYTQYKPL 78
LNGIDY Y L
Sbjct: 474 LNGIDYMNYHQL 485
>AT1G10410.1 | chr1:3416842-3419264 REVERSE LENGTH=486
Length = 485
Score = 130 bits (328), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 59/69 (85%), Positives = 63/69 (91%)
Query: 10 GDNYFEVDIDMHRFSYISRKGFETFLDRLKICMLDVGLTIQGNKAEELPEQILCCVRLNG 69
GDNYFE+DIDMHRF YISRKGFETF+DRLKIC+LDVGLTIQGNK EELPEQILCCVRLNG
Sbjct: 412 GDNYFEIDIDMHRFGYISRKGFETFIDRLKICVLDVGLTIQGNKPEELPEQILCCVRLNG 471
Query: 70 IDYTQYKPL 78
ID+ Y L
Sbjct: 472 IDFMNYHQL 480
>AT1G13970.1 | chr1:4779742-4781882 REVERSE LENGTH=505
Length = 504
Score = 108 bits (270), Expect = 5e-25, Method: Composition-based stats.
Identities = 46/74 (62%), Positives = 58/74 (78%)
Query: 7 YLQGDNYFEVDIDMHRFSYISRKGFETFLDRLKICMLDVGLTIQGNKAEELPEQILCCVR 66
+ QG NYFE+D+D+HRFSYISRKG E+F DR+K +LD+GLTIQ EELPEQ+LCCVR
Sbjct: 425 FFQGPNYFEIDLDIHRFSYISRKGLESFRDRIKNGILDLGLTIQAQSPEELPEQVLCCVR 484
Query: 67 LNGIDYTQYKPLMT 80
LN ID+ + + T
Sbjct: 485 LNKIDFVNHGQIPT 498
>AT3G29180.1 | chr3:11149073-11151322 FORWARD LENGTH=514
Length = 513
Score = 105 bits (261), Expect = 7e-24, Method: Composition-based stats.
Identities = 44/69 (63%), Positives = 55/69 (79%)
Query: 7 YLQGDNYFEVDIDMHRFSYISRKGFETFLDRLKICMLDVGLTIQGNKAEELPEQILCCVR 66
+ +G NYFE+D+D+HRFSYISRKG E F DRLK LD+GLTIQ K EELPEQ+LCC+R
Sbjct: 429 FFKGPNYFEIDLDVHRFSYISRKGLEAFRDRLKNGTLDLGLTIQAQKPEELPEQVLCCLR 488
Query: 67 LNGIDYTQY 75
L+ ID+ +
Sbjct: 489 LSKIDFVDH 497
>AT5G39430.1 | chr5:15775302-15777599 REVERSE LENGTH=512
Length = 511
Score = 101 bits (252), Expect = 6e-23, Method: Composition-based stats.
Identities = 42/66 (63%), Positives = 54/66 (81%)
Query: 7 YLQGDNYFEVDIDMHRFSYISRKGFETFLDRLKICMLDVGLTIQGNKAEELPEQILCCVR 66
+ +G NYFE+D+D+HRFSY+SRKG E F DRLK LD+GLTIQ K EELPE++LCC+R
Sbjct: 426 FFKGPNYFEIDLDVHRFSYLSRKGLEAFRDRLKNGTLDLGLTIQAQKQEELPEKVLCCLR 485
Query: 67 LNGIDY 72
L+ ID+
Sbjct: 486 LSKIDF 491
>AT5G24990.1 | chr5:8610591-8611475 FORWARD LENGTH=295
Length = 294
Score = 47.8 bits (112), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 7 YLQGDNYFEVDIDMHRFSYISRKGFETFLDRLKICMLDVGLTIQGNKAEELPEQILCCVR 66
Y +GDNYFEVD+D+ S I L + M+D+G ++ AEELPE+++ R
Sbjct: 199 YYRGDNYFEVDVDISS-SAIMTALIRFMLGYVTYLMVDIGFVVEAQTAEELPERLIGGAR 257
Query: 67 L 67
+
Sbjct: 258 I 258
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.144 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,872,761
Number of extensions: 67826
Number of successful extensions: 195
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 6
Length of query: 83
Length of database: 11,106,569
Length adjustment: 54
Effective length of query: 29
Effective length of database: 9,626,105
Effective search space: 279157045
Effective search space used: 279157045
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 104 (44.7 bits)