BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0679000 Os03g0679000|AK059913
         (218 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G37680.1  | chr2:15803500-15805515 REVERSE LENGTH=216          352   6e-98

>AT2G37680.1 | chr2:15803500-15805515 REVERSE LENGTH=216
          Length = 215

 Score =  352 bits (904), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 167/218 (76%), Positives = 188/218 (86%), Gaps = 3/218 (1%)

Query: 1   MPVRVVDTATPSSQPSSGQDANAGHPSPPSCSLLSAGRCYAGTQNVSNIQKEEAWKVNVR 60
           MPVRVV++ TP+    SG D     P PPS SLL AG+ ++GTQNVSN QKEEAW+VNV+
Sbjct: 1   MPVRVVESNTPAQ--VSGTDPGNRSPLPPS-SLLGAGQAFSGTQNVSNQQKEEAWRVNVQ 57

Query: 61  IHGCDLEQGYLCGTMEALNVPLADTPVVTFWEGEIVDAKNYTFFTGKWEASPEDDIRHWS 120
           I G DLE GYLCGTMEALNVP+ADTPV+TFWEGEIVD KNYTF+TGKWEA+ EDD+RHWS
Sbjct: 58  IQGIDLEHGYLCGTMEALNVPMADTPVITFWEGEIVDGKNYTFYTGKWEATREDDMRHWS 117

Query: 121 KFPSFTPLLSQIETDGGKSVDLSNYAYIFMRWKEQYFVNVGVDCGLTIAGFYYVCFSCSD 180
           KFPSF+PL  Q+E+DGG+ +DL+NY YIFMRWKEQYFVNVG DCGLTIAGFYYVCFSCSD
Sbjct: 118 KFPSFSPLQGQVESDGGRQLDLNNYPYIFMRWKEQYFVNVGTDCGLTIAGFYYVCFSCSD 177

Query: 181 GSISGYYYDPNSSPFQKLELKCTNEKDSGFTFSSYELQ 218
           GSISG+YYDPNSSPFQKLELK  NE  SGF+FSSYELQ
Sbjct: 178 GSISGFYYDPNSSPFQKLELKTVNEGRSGFSFSSYELQ 215



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.134    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,673,419
Number of extensions: 248039
Number of successful extensions: 588
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 587
Number of HSP's successfully gapped: 1
Length of query: 218
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 123
Effective length of database: 8,502,049
Effective search space: 1045752027
Effective search space used: 1045752027
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)