BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0662000 Os03g0662000|AK102561
         (82 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G48030.1  | chr1:17717432-17719141 REVERSE LENGTH=508          103   2e-23
AT3G17240.1  | chr3:5890278-5892166 REVERSE LENGTH=508            103   3e-23

>AT1G48030.1 | chr1:17717432-17719141 REVERSE LENGTH=508
          Length = 507

 Score =  103 bits (257), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/70 (75%), Positives = 58/70 (82%)

Query: 7   RARSEVSVVEFASDIVPSMDGQIRKPFKHMLEKQKMKFMLKTMVVGVDASGSCVKLTVEP 66
           R  SEV+VVEFA DIVPSMDG+IRK F+  LEKQKMKFMLKT VV VD+S   VKLTVEP
Sbjct: 235 RLGSEVTVVEFAGDIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVSVDSSSDGVKLTVEP 294

Query: 67  AAGGEQSILD 76
           A GGEQSIL+
Sbjct: 295 AEGGEQSILE 304



>AT3G17240.1 | chr3:5890278-5892166 REVERSE LENGTH=508
          Length = 507

 Score =  103 bits (256), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 51/70 (72%), Positives = 59/70 (84%)

Query: 7   RARSEVSVVEFASDIVPSMDGQIRKPFKHMLEKQKMKFMLKTMVVGVDASGSCVKLTVEP 66
           R  SEV+VVEFA+DIVP+MDG+IRK F+  LEKQKMKFMLKT VVGVD+SG  VKL VEP
Sbjct: 235 RLGSEVTVVEFAADIVPAMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDSSGDGVKLIVEP 294

Query: 67  AAGGEQSILD 76
           A GGEQ+ L+
Sbjct: 295 AEGGEQTTLE 304



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.135    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,597,222
Number of extensions: 49986
Number of successful extensions: 114
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 2
Length of query: 82
Length of database: 11,106,569
Length adjustment: 53
Effective length of query: 29
Effective length of database: 9,653,521
Effective search space: 279952109
Effective search space used: 279952109
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 105 (45.1 bits)