BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0656500 Os03g0656500|AK121052
(575 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G17860.1 | chr5:5902638-5904350 REVERSE LENGTH=571 257 2e-68
AT5G17850.1 | chr5:5899253-5900932 FORWARD LENGTH=560 208 5e-54
AT1G54115.1 | chr1:20202118-20204052 FORWARD LENGTH=645 149 5e-36
AT3G14070.1 | chr3:4661143-4663074 REVERSE LENGTH=644 147 1e-35
AT1G08960.1 | chr1:2879698-2881877 FORWARD LENGTH=547 82 7e-16
>AT5G17860.1 | chr5:5902638-5904350 REVERSE LENGTH=571
Length = 570
Score = 257 bits (656), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 163/528 (30%), Positives = 229/528 (43%), Gaps = 40/528 (7%)
Query: 68 QGSCQELQSIEGGEA---------------RCLYLRTHPPCAPAGYVDYLRLFYCXXXXX 112
GS Q L S GG++ +C Y+R+ C P GY+DYL++F+C
Sbjct: 38 SGSIQTLNSFAGGDSDSCSGGLASLDDHRSKCSYIRSQSKCGPQGYIDYLKIFFCIFGQS 97
Query: 113 XXXXXXXXXXXXXXXXXXXGDTASEYFCASLEGLSAELRLPPAIAGVTLLSLGNGAPDVF 172
GDTA+ YFC SL+ LS L+L P +AGVTLLSLGNGAPD+F
Sbjct: 98 PVLGHLVLSAWLFVLFYLLGDTAASYFCPSLDSLSKVLKLSPTMAGVTLLSLGNGAPDLF 157
Query: 173 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELRGFVRDXXX 232
+ F+RD
Sbjct: 158 SSVVSFTRSNNGDFGLNSILGGAFFVSSFVVGTICVLIGSRDVAI----DRNSFIRDVVF 213
Query: 233 XXXXXXXXXXXXVTGTVTVWVSASFVSLYVAYVLLVWTSHCCSEPGKXXXXXXXXXXXXX 292
G VT+WV+ ++S+Y+ YV + SH +
Sbjct: 214 LLVALCCLGLIIFIGKVTIWVALCYLSIYLLYVGFLSVSHFFDRKKRMSDQILRSREDLA 273
Query: 293 XXG---------GVTPLPSYSKN-------SAPSKKRAYLHCLLSAILIPLYLPRRLTIP 336
G LP + +P + R+ L+S I +PLYLPRRLTIP
Sbjct: 274 EMGVSLLGYIAEEKLALPEKTTQEFKIVFEDSPKRHRSCFSVLVSIIGLPLYLPRRLTIP 333
Query: 337 DIAGHRWSRPCXXXXXXXXXXXXXXTWAS---SCRHXXXXXXXXXXXXXXXXXXXXXTTE 393
+ +WS+PC + S + TTE
Sbjct: 334 VVCEEKWSKPCAVVSTAIAPVLLTELYCSHYSGSQRNLILYIISGSIGLIVGILAYLTTE 393
Query: 394 AASPPRGRWRRVPWLAAGFLMSVLWAYTLARELVALLVAIGYMVGVRASVLGVTVLAWGD 453
+ PP+ ++ V WL GF MSV W Y +A+ELV+LL+++G + G+ SVLG+TVLAWG+
Sbjct: 394 KSHPPK-KFSLV-WLLGGFTMSVTWTYMIAQELVSLLISLGNIFGISPSVLGLTVLAWGN 451
Query: 454 SLGDLVSNVAMALHGGAGGAQTAVSGCYAGPLFNXXXXXXXXXXXXXXXQYPAPFAIPAG 513
SLGDL++NV +A HGG GAQ A+SGCYAGPLFN +YP + IP+
Sbjct: 452 SLGDLIANVTVAFHGGNDGAQIALSGCYAGPLFNTVIGLGVPLVISSLAEYPGVYIIPSD 511
Query: 514 GAVYEXXXXXXXXXXXXXXXXPARGMRLDRVYGMGLIAIYLAFVTIRV 561
++ E P + MRLD++ G GL+AIYL F+++R+
Sbjct: 512 NSLLETLGFLMVGLLWALVIMPKKKMRLDKLVGGGLLAIYLCFLSLRL 559
>AT5G17850.1 | chr5:5899253-5900932 FORWARD LENGTH=560
Length = 559
Score = 208 bits (530), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 157/520 (30%), Positives = 215/520 (41%), Gaps = 23/520 (4%)
Query: 66 EEQGSCQELQSIEGGEARCLYLRTHPPCAPAGYVDYLRLFYCXXXXXXXXXXXXXXXXXX 125
+ + C L+ +++C YL++ PCA G+ DYL YC
Sbjct: 41 KSEHDCSALKHFHDYKSKCAYLKSIDPCASQGFFDYLSFLYCNFEGFPILGQFLLFLWLL 100
Query: 126 XXXXXXGDTASEYFCASLEGLSAELRLPPAIAGVTLLSLGNGAPDVFXXXXXXXXXXXXX 185
G TASEYFC+SLE LS L L P +AGVTLLSLGNGAPD+F
Sbjct: 101 LLFYLLGHTASEYFCSSLESLSKLLNLSPTVAGVTLLSLGNGAPDLFASLVSFMGESKGT 160
Query: 186 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELRGFVRDXXXXXXXXXXXXXXXV 245
E F+RD V
Sbjct: 161 YDVGLNTVVGGSGFVTCVVVGIISISLHKRRVRI--ERAAFIRDICFFCAAIGSLALILV 218
Query: 246 TGTVTVWVSASFVSLY---VAYVLLVW----------TSHCCSEPGKXXXXXXXXXXXXX 292
G + W + F SLY VA+V+L W + G
Sbjct: 219 YGKINFWGALGFCSLYAVYVAFVVLSWRFGGDQGAESDLESIHKRGSLSEPILQRDGLEE 278
Query: 293 XXGGVTPLPSYSKNSAPSKKRAYL--HCLLSAILIPLYLPRRLTIPDIAGHRWSRPCXXX 350
GV + +R Y ++ AI +PL LPR LTIP ++ +WS+P
Sbjct: 279 IEDGVVNGEHQIVDDDDDHQRYYYWKRLVIWAITLPLNLPRILTIPVVSEDKWSKPLAVA 338
Query: 351 XXXXXXXXXXXTW----ASSCRHXXXXXXXXXXXXXXXXXXXXXTTEAASPPRGRWRRVP 406
W + TT+ +PP+ +W +P
Sbjct: 339 SVTFAPVLLSFLWNWKRKPTSFEAGVVYLIGCLIGIALGFIAGATTKKLTPPK-KWL-LP 396
Query: 407 WLAAGFLMSVLWAYTLARELVALLVAIGYMVGVRASVLGVTVLAWGDSLGDLVSNVAMAL 466
WLA GF+MS+ W+Y A+ELVALL ++GY+ GV S+LG+TVLAWG+S+GDL++N+ MAL
Sbjct: 397 WLAGGFVMSMTWSYISAQELVALLTSLGYIFGVSPSILGLTVLAWGNSIGDLITNLTMAL 456
Query: 467 HGGAGGAQTAVSGCYAGPLFNXXXXXXXXXXXXXXXQYPAPFAIPAGGAVYEXXXXXXXX 526
H G GAQ AVSGCYAGP+FN YP I + E
Sbjct: 457 HDGNEGAQVAVSGCYAGPIFNTLFALGISLVGCAWEAYPLSIVIKTDPRLLESLGFLVAG 516
Query: 527 XXXXXXXXPARGMRLDRVYGMGLIAIYLAFVTIRVFDSLG 566
+ MRL V G+GL+ IYLA +++R+ ++G
Sbjct: 517 LVWSFLVLFSNRMRLGGVMGIGLLVIYLASLSLRIMQTVG 556
>AT1G54115.1 | chr1:20202118-20204052 FORWARD LENGTH=645
Length = 644
Score = 149 bits (375), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 122/246 (49%), Gaps = 7/246 (2%)
Query: 326 PLYLPRRLTIPDIAGHRWSRPCXXXXXXXXXXXXXXTWAS----SCRHXXXXXXXXXXXX 381
PL +PRRLTIP I WS+ W+S S +
Sbjct: 397 PLTVPRRLTIPLIEEDSWSKTYAVASVSLAPVLLSFLWSSQDDTSLQARIVAYFIGIAIG 456
Query: 382 XXXXXXXXXTTEAASPPRGRWRRVPWLAAGFLMSVLWAYTLARELVALLVAIGYMVGVRA 441
TE PP+ +PW+ GF+MS++W Y +A ELVALLV G + G+
Sbjct: 457 STLGYLAFKNTEPDRPPQ--IYLIPWVLGGFIMSIVWFYMIANELVALLVTFGGIYGINP 514
Query: 442 SVLGVTVLAWGDSLGDLVSNVAMALHGGAGGAQTAVSGCYAGPLFNXXXXXXXXXXXXXX 501
S+LG+TVLAWG+S+GDLVSN+A++++GG G Q A+SGCYAGP+FN
Sbjct: 515 SILGLTVLAWGNSMGDLVSNIALSMNGG-DGVQIALSGCYAGPMFNTLVGLGMSMFLGAW 573
Query: 502 XQYPAPFAIPAGGAVYEXXXXXXXXXXXXXXXXPARGMRLDRVYGMGLIAIYLAFVTIRV 561
+ P + IP +++ P MR ++V G+GLI +YL FVT R+
Sbjct: 574 SKSPETYMIPEDNSLFYTLGFLIFGLIWSLVMLPRNEMRPNKVMGIGLITLYLIFVTFRL 633
Query: 562 FDSLGL 567
++G
Sbjct: 634 SSAMGF 639
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 82/199 (41%), Gaps = 4/199 (2%)
Query: 70 SCQELQSIEGGEARCLYLRTHPPCAPAGYVDYLRLFYCXXXXXXXXXXXXXXXXXXXXXX 129
SC L G +C +L+++P C+P G+ DYL+ FYC
Sbjct: 90 SCSGLHEHRGYADQCEFLKSNPICSPDGFFDYLKFFYCSCRDFKILGYILLGVWLVALFY 149
Query: 130 XXGDTASEYFCASLEGLSAELRLPPAIAGVTLLSLGNGAPDVFXXXXXXXXXXXXXXXXX 189
G+TA++YFC SLE LS LRLPP +AGVTLL LGNGAPDVF
Sbjct: 150 LLGNTAADYFCCSLEKLSKLLRLPPTVAGVTLLPLGNGAPDVF----ASIAAFVGSDKGE 205
Query: 190 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELRGFVRDXXXXXXXXXXXXXXXVTGTV 249
+ + F+RD + G V
Sbjct: 206 VGLNSVLGGAVFVTCVVVGIVSLCVADKEVKIDKKCFIRDLSFFLFTLVALMVILMVGKV 265
Query: 250 TVWVSASFVSLYVAYVLLV 268
TV ++ +FVS+YV Y LV
Sbjct: 266 TVGIAIAFVSIYVFYASLV 284
>AT3G14070.1 | chr3:4661143-4663074 REVERSE LENGTH=644
Length = 643
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 88/251 (35%), Positives = 124/251 (49%), Gaps = 7/251 (2%)
Query: 321 SAILIPLYLPRRLTIPDIAGHRWSRPCXXXXXXXXXXXXXXTWAS----SCRHXXXXXXX 376
S + IPL +PRRLTIP + WS+ W+S S +
Sbjct: 391 SLLEIPLTIPRRLTIPSVEEDTWSKTYAVASVSLAPVLLASLWSSQDDVSLQACGVAYFF 450
Query: 377 XXXXXXXXXXXXXXTTEAASPPRGRWRRVPWLAAGFLMSVLWAYTLARELVALLVAIGYM 436
TE PPR R+ +PW+ GF+MS++W Y +A ELVALLV G +
Sbjct: 451 SVVIGSTLGFLAYKNTEPDHPPR-RFL-IPWVLGGFIMSIVWFYMIANELVALLVTFGEI 508
Query: 437 VGVRASVLGVTVLAWGDSLGDLVSNVAMALHGGAGGAQTAVSGCYAGPLFNXXXXXXXXX 496
G+ S+L +TVLAWG+S+GDLVSN+A+ ++GG G Q A+SGCYAGP+FN
Sbjct: 509 YGINPSILALTVLAWGNSMGDLVSNIALTMNGG-DGVQIALSGCYAGPMFNTLVGLGMSM 567
Query: 497 XXXXXXQYPAPFAIPAGGAVYEXXXXXXXXXXXXXXXXPARGMRLDRVYGMGLIAIYLAF 556
+ P + +P +++ P M+ R G+GLIAIYL F
Sbjct: 568 LFGAWSKSPDTYMLPEDKSLFYTLGFLVLGLVWAMVILPRNDMQPSRTLGVGLIAIYLIF 627
Query: 557 VTIRVFDSLGL 567
VT R+ ++G
Sbjct: 628 VTFRLSCAMGF 638
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 78/198 (39%), Gaps = 4/198 (2%)
Query: 71 CQELQSIEGGEARCLYLRTHPPCAPAGYVDYLRLFYCXXXXXXXXXXXXXXXXXXXXXXX 130
C L G +C +L+ +P C+P G+ DYL FYC
Sbjct: 92 CSGLHKHMGYADQCEFLKANPICSPDGFFDYLSFFYCSCRDFSILGYMMLGVWLVALFYL 151
Query: 131 XGDTASEYFCASLEGLSAELRLPPAIAGVTLLSLGNGAPDVFXXXXXXXXXXXXXXXXXX 190
G+TA++YFC SLE LS LRLPP +AGVTLL LGNGAPDVF
Sbjct: 152 LGNTAADYFCCSLEKLSKLLRLPPTVAGVTLLPLGNGAPDVF----ASIAAFVGTDKGEV 207
Query: 191 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELRGFVRDXXXXXXXXXXXXXXXVTGTVT 250
+ F+RD + G VT
Sbjct: 208 GLNSVLGGAVFVTSVVVGIVSLCVADKEVKIDKNCFIRDLSFFLFSLVSLLVILMVGRVT 267
Query: 251 VWVSASFVSLYVAYVLLV 268
V ++ +FVS+YV Y LV
Sbjct: 268 VRIAIAFVSIYVVYAFLV 285
>AT1G08960.1 | chr1:2879698-2881877 FORWARD LENGTH=547
Length = 546
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 5/170 (2%)
Query: 392 TEAASPPRGRWRRVPWLAAGFLMSVLWAYTLARELVALLVAIGYMVGVRASVLGVTVLAW 451
T PP+ ++P + F+MSV W T+A EL+ L A+G ++ + ++LG+TVLAW
Sbjct: 375 TVEKQPPKTE--QLPVIVVAFIMSVFWISTIAGELLNCLAALGTLLKLPPALLGLTVLAW 432
Query: 452 GDSLGDLVSNVAMALHGGAGGAQTAVSGCYAGPLFNXXXXXXXXXXXXXXXQYPAPFAIP 511
G+S+GDLV++VA+A AG A++GC+AGP+FN YP + +
Sbjct: 433 GNSVGDLVADVAVA---KAGRPAMAMAGCFAGPMFNMLVGLGSALVMQTANVYPDAYKLG 489
Query: 512 AGGAVYEXXXXXXXXXXXXXXXXPARGMRLDRVYGMGLIAIYLAFVTIRV 561
+ R+ R +G+ L+ +Y+AF + +
Sbjct: 490 FHVGIVIAFVFLLLSLMGSLLVITWSRFRVPRFWGICLVGLYVAFTFVSL 539
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.139 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,035,327
Number of extensions: 222407
Number of successful extensions: 540
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 527
Number of HSP's successfully gapped: 9
Length of query: 575
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 471
Effective length of database: 8,255,305
Effective search space: 3888248655
Effective search space used: 3888248655
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 114 (48.5 bits)