BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0654600 Os03g0654600|J033124A21
         (47 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G04900.1  | chr5:1434826-1437194 FORWARD LENGTH=349             67   1e-12

>AT5G04900.1 | chr5:1434826-1437194 FORWARD LENGTH=349
          Length = 348

 Score = 67.4 bits (163), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 30/37 (81%), Positives = 35/37 (94%)

Query: 1   VADYLVPNIRAIPTNQSMKPTYIRFLTGLKAYSRIFS 37
           VA+YLVPNIRAIP + SMKPTYIRFLTG+KAY++IFS
Sbjct: 297 VAEYLVPNIRAIPASGSMKPTYIRFLTGIKAYTKIFS 333



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.330    0.143    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 884,726
Number of extensions: 20824
Number of successful extensions: 36
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 1
Length of query: 47
Length of database: 11,106,569
Length adjustment: 21
Effective length of query: 26
Effective length of database: 10,530,833
Effective search space: 273801658
Effective search space used: 273801658
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 104 (44.7 bits)