BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0652100 Os03g0652100|AK102019
(856 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G18230.2 | chr5:6021610-6027031 REVERSE LENGTH=846 749 0.0
AT1G07705.2 | chr1:2382090-2385856 FORWARD LENGTH=615 64 5e-10
AT5G59710.1 | chr5:24058157-24061736 FORWARD LENGTH=615 58 2e-08
>AT5G18230.2 | chr5:6021610-6027031 REVERSE LENGTH=846
Length = 845
Score = 749 bits (1933), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/892 (49%), Positives = 559/892 (62%), Gaps = 86/892 (9%)
Query: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNK--VYDTENANQKEKFEADLKKEIKKLQRY 58
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNK VYDT+N NQKEKFEADLKKEIKKLQRY
Sbjct: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKWNVYDTDNVNQKEKFEADLKKEIKKLQRY 60
Query: 59 RDQIKTWIQSSEIKDKK-------ALMDARKQIEREMERFKVCEKETKTKAFSKEGLGQQ 111
RDQIKTWIQSSEIKDKK +L+DARK IE+EMERFK+CEKETKTKAFSKEGLGQQ
Sbjct: 61 RDQIKTWIQSSEIKDKKVSASYEQSLVDARKLIEKEMERFKICEKETKTKAFSKEGLGQQ 120
Query: 112 PKTDPKEKAKAETRDWLNNVVSDLENQIDNFEAEVEGLSIKKGKQRPPRLVHLEKSITRH 171
PKTDPKEKAK+ETRDWLNNVVS+LE+QID+FEAE+EGLS+KKGK RPPRL HLE SITRH
Sbjct: 121 PKTDPKEKAKSETRDWLNNVVSELESQIDSFEAELEGLSVKKGKTRPPRLTHLETSITRH 180
Query: 172 KAHIKKLESILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDEFSDVEELYSTLPMEKV 231
K HI KLE ILRLLDNDELSPEQVNDVKDFLDDYVERNQ+DFDEFSDV+ELYSTLP+++V
Sbjct: 181 KDHIIKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQDDFDEFSDVDELYSTLPLDEV 240
Query: 232 EALEDMVSLAPSSLVKGVASVSTTAVLSTKSSVATSPTQATVSAAPSLSVSQDQAEETAS 291
E LED+V+ P LVKG LS KSS+A S +Q + P+ Q++ E+T+
Sbjct: 241 EGLEDLVTAGP--LVKGTP-------LSMKSSLAASASQVRSISLPTH--HQEKTEDTSL 289
Query: 292 QESNPESAPQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVRPIVPTTTAAVLP 351
+S+ E P+T RP + V
Sbjct: 290 PDSSAEMVPKTPPPKNGAGLHSAPSTPAGG-----------------RPSLNVPAGNVSN 332
Query: 352 ASVTARSAPENIPAVTSAPANSSSTLKDDDNMSFPSRRSSPAVTEIGLGRGITR-GLTSQ 410
SVT ++ ++ S + S K++D + PSR+ +V + L RGI R G+ +Q
Sbjct: 333 TSVTLSTSIPTQTSIESMGSLSPVAAKEEDATTLPSRKPPSSVADTPL-RGIGRVGIPNQ 391
Query: 411 GLGSAPISIGPVSGNG-SVSALTDLSKRNMLNTDERINSGGISQQLISPLGNKAQPQQVL 469
S P S P +G+ S ++ +++KRN++ + + Q L SPL P
Sbjct: 392 PQPSQPPSPIPANGSRISATSAAEVAKRNIMGVESNV------QPLTSPLSKMVLPPTAK 445
Query: 470 RXXXXXXXXXXXXXXXXVLGGRIFSPPVVSGVQWRPQNTAGLQNQSEAGQFCGRPEISAD 529
+ GR FSP +VSG QWRP + QN++ GR EI+ D
Sbjct: 446 GNDGTASDSNPGDVAASI--GRAFSPSIVSGSQWRPGSPFQSQNET----VRGRTEIAPD 499
Query: 530 QREKYXXXXXXXXX-XXXXXNVSHITGISQKQFPSQQPNPLLXXXXXXXXXXXXXAGI-- 586
QREK+ + ++G ++KQF SQQ NPLL G+
Sbjct: 500 QREKFLQRLQQVQQGHGNLLGIPSLSGGNEKQFSSQQQNPLLQQSSSISPHGSLGIGVQA 559
Query: 587 --------------------GLG-QVQVPESGHTKSEEQQQSFAEDVSVESVATAGANKH 625
LG Q V + H ++++Q Q +++ +S + A +
Sbjct: 560 PGFNVMSSASLQQQSNAMSQQLGQQPSVADVDHVRNDDQSQ---QNLPDDSASIAASKAI 616
Query: 626 MSEDDTKIPFSNPS---ASITEGTQLSRDPDLPAGQPLQPGMXXXXXXXXXXXXXXDLGA 682
SEDD+K+ F PS + + + Q+S PD GQP+QPG +LGA
Sbjct: 617 QSEDDSKVLFDTPSGMPSYMLDPVQVSSGPDFSPGQPIQPGQSSSSLGVIGRRSNSELGA 676
Query: 683 IGDNLSVASASTSHDLLYNLQMLEAAFHRLPQPKDSERVKNYIPKHPAVTPASFPQIQAP 742
IGD +V HD ++NLQMLEAAF++ PQP DSER + Y P++PA+TP +FPQ QAP
Sbjct: 677 IGDPSAVGPM---HDQMHNLQMLEAAFYKRPQPSDSERPRPYSPRNPAITPQTFPQTQAP 733
Query: 743 VVSNPAFWERMGGDSLSTDLLFFAFYYQQNTYQQFLSARELKKQSWRFHRKYNTWFQRHV 802
+++NP WER+G D+ TD LFFAFYYQQN+YQQ+L+A+ELKKQSWR+HRK+NTWFQRH
Sbjct: 734 IINNPLLWERLGSDAYGTDTLFFAFYYQQNSYQQYLAAKELKKQSWRYHRKFNTWFQRHK 793
Query: 803 EPQVTTDEYERGSYVYFDFHV-IDDGTGSGWCQRIKNDFTFEYNFLEDELSV 853
EP++ TDEYE+G+YVYFDF D+ GWCQRIKN+FTFEY++LEDEL V
Sbjct: 794 EPKIATDEYEQGAYVYFDFQTPKDENQEGGWCQRIKNEFTFEYSYLEDELVV 845
>AT1G07705.2 | chr1:2382090-2385856 FORWARD LENGTH=615
Length = 614
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 46/99 (46%), Gaps = 14/99 (14%)
Query: 758 LSTDLLFFAFYYQQNTYQQFLSARELKKQSWRFHRKYNTWFQRHVEPQVTTDEYERGSYV 817
L + LF+ FY Q +A EL + W +H+++ WF R EP V T+ YERGSY
Sbjct: 521 LLVETLFYVFYSMPKDEAQLYAANELYNRGWFYHKEHRLWFIRIGEPLVKTNAYERGSYH 580
Query: 818 YFD---FHVIDDGTGSGWCQRIKNDFTFEYNFLEDELSV 853
FD F ++ K +F Y LE S+
Sbjct: 581 CFDPNSFEIVQ-----------KENFVLYYEMLEKRPSI 608
>AT5G59710.1 | chr5:24058157-24061736 FORWARD LENGTH=615
Length = 614
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 34/63 (53%)
Query: 758 LSTDLLFFAFYYQQNTYQQFLSARELKKQSWRFHRKYNTWFQRHVEPQVTTDEYERGSYV 817
S +LLF+ FY Q +A EL ++ W +H++ WF R EP V YERG+Y
Sbjct: 524 FSYELLFYTFYSMPKDEAQLYAADELYERGWFYHKELRVWFFRVGEPLVRAATYERGTYE 583
Query: 818 YFD 820
Y D
Sbjct: 584 YLD 586
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.311 0.127 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 16,695,798
Number of extensions: 691949
Number of successful extensions: 2601
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2591
Number of HSP's successfully gapped: 5
Length of query: 856
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 749
Effective length of database: 8,173,057
Effective search space: 6121619693
Effective search space used: 6121619693
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 116 (49.3 bits)