BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0649000 Os03g0649000|J100048O04
(204 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G11760.1 | chr3:3718529-3721123 FORWARD LENGTH=703 58 3e-09
AT5G04860.1 | chr5:1411760-1414459 REVERSE LENGTH=783 55 2e-08
AT2G25460.1 | chr2:10833175-10835374 REVERSE LENGTH=424 52 3e-07
>AT3G11760.1 | chr3:3718529-3721123 FORWARD LENGTH=703
Length = 702
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 80/191 (41%), Gaps = 44/191 (23%)
Query: 16 KFRVRLVVRRAEGLQQPCXXXXXXXXXXXXXXPPTRVAAEVRWKGPKASPLSSLXXXXXX 75
K+ V+L V++ EG R+ E+RWKGPKA+ L SL
Sbjct: 18 KYEVKLSVKKLEGWD----------LVREGVPEKDRLTVEIRWKGPKAT-LGSLRRSVKR 66
Query: 76 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWE-EEFESTVTLAAASHREH 134
WE EEF+S +L + +
Sbjct: 67 NFTKEAVGESDVVS--------------------------WEDEEFQSLCSLTSY---KD 97
Query: 135 AAFQPWELAFSVFT-AANRGPKIKPSILGTASLNLADYASAAEEN-IEIILPLSVPNGSA 192
+ F PWE+ FSVFT +G K K ++GTA LNLA+YA ++ +I +PL++ A
Sbjct: 98 SLFYPWEITFSVFTNGMKQGQKNKAPVVGTAFLNLAEYACVTDKKEFDINIPLTLSACVA 157
Query: 193 -ESAPSLHVSL 202
E+ P L VSL
Sbjct: 158 SETHPLLFVSL 168
>AT5G04860.1 | chr5:1411760-1414459 REVERSE LENGTH=783
Length = 782
Score = 55.5 bits (132), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 116 WEEEFESTVTLAAASHREHAAFQPWELAFSVFTAANRGPKIKPSILGTASLNLADYAS-A 174
W EEF+ + + +F PW ++ +VF+ N+G K K G ASLN+A+Y S
Sbjct: 96 WNEEFKRVCEFSV---YKEGSFLPWFVSLTVFSGLNQGSKEKVRSFGKASLNIAEYFSLM 152
Query: 175 AEENIEIILPLSVPNGSAESAPSLHVSL 202
E+++++ +PL + S+ +P +H+SL
Sbjct: 153 KEDDVQVKVPLKDCDSSSVRSPHVHISL 180
>AT2G25460.1 | chr2:10833175-10835374 REVERSE LENGTH=424
Length = 423
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 10/70 (14%)
Query: 116 WEEEFESTVTLAAASHREHAAFQPWELAFSVFTAANRGPKIKPSILGTASLNLADYASAA 175
WEEEFE + PW L+F+VF N K K S++G ASL+L++ AS
Sbjct: 79 WEEEFERVCCIVG----------PWNLSFNVFYGENMDAKNKKSLIGKASLDLSELASKQ 128
Query: 176 EENIEIILPL 185
E +E LP+
Sbjct: 129 ESTVERKLPI 138
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.128 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,513,166
Number of extensions: 66761
Number of successful extensions: 113
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 3
Length of query: 204
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 110
Effective length of database: 8,529,465
Effective search space: 938241150
Effective search space used: 938241150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)