BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0647800 Os03g0647800|AK070243
(263 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G44150.1 | chr3:15887617-15888728 FORWARD LENGTH=247 309 1e-84
AT3G11800.1 | chr3:3726154-3727562 FORWARD LENGTH=247 284 3e-77
AT2G15910.1 | chr2:6932917-6935333 REVERSE LENGTH=368 233 5e-62
AT3G48630.1 | chr3:18018234-18018782 REVERSE LENGTH=129 61 6e-10
>AT3G44150.1 | chr3:15887617-15888728 FORWARD LENGTH=247
Length = 246
Score = 309 bits (791), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 146/218 (66%), Positives = 179/218 (82%), Gaps = 3/218 (1%)
Query: 48 DENGVYDPCSDTRIQRGDGFSFGIAFATLGAFYSGGSVQLSPCDRRLSLAS-SGQLAVFR 106
+ N +Y PCSDTRIQR DGF+FGIAF++ +F+ +V LSPCDRRLSLA+ + Q +VFR
Sbjct: 30 NTNTIYSPCSDTRIQRSDGFTFGIAFSSRPSFFINQTVLLSPCDRRLSLAAMNSQFSVFR 89
Query: 107 PKVDEISLLTINTTTGFNPATAGGYMVAFAGRKYAARSVPTFVSNSSYTVSSFTLVLEFN 166
PK+DEISLL+INT+ F P GGYMVAFAGRKYAARS+P F++NS++ V+SFTLV+EF
Sbjct: 90 PKIDEISLLSINTS-AFFPDNYGGYMVAFAGRKYAARSIPAFIANSTFIVTSFTLVMEFQ 148
Query: 167 KGRLQNLHWKKDGCGACAKSSSLVCIGKQTCAFRTQSCKSQ-GPVDCSIGIQLAFSGTDK 225
KGRLQNL+WK+DGC +C + + VC+ KQ CA RT SCK + G VDCS+GIQLAFSGTDK
Sbjct: 149 KGRLQNLYWKRDGCASCKGNQNFVCLNKQDCAIRTPSCKGRGGAVDCSLGIQLAFSGTDK 208
Query: 226 HESVLNSWYEVSNLRQYSLYGLYSNLKDTLSGQFNKFF 263
H +VLNSWYEV NL+QYSLYGLYSNLK +L+ QFN FF
Sbjct: 209 HLAVLNSWYEVENLKQYSLYGLYSNLKSSLTNQFNNFF 246
>AT3G11800.1 | chr3:3726154-3727562 FORWARD LENGTH=247
Length = 246
Score = 284 bits (727), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 139/223 (62%), Positives = 171/223 (76%), Gaps = 7/223 (3%)
Query: 48 DENGVYDPCSDTRIQRGDGFSFGIAFATLGAFYS---GGSVQLSPCDRR-LSLASSGQLA 103
D N VY PCSD+ + GDGF+FGIAFA +F+S SVQ SPCD R LSL + ++A
Sbjct: 24 DNNQVYSPCSDSTVAIGDGFTFGIAFAAKDSFFSTNRSKSVQYSPCDHRHLSLNGNSEVA 83
Query: 104 VFRPKVDEISLLTINTTTG--FNPATAGGYMVAFAGRKYAARSVPTFVSNSSYTVSSFTL 161
VFRPKVDEI+LLTINT++ F P + GYMVAFAG KYAARS+P V++S++ V+SFTL
Sbjct: 84 VFRPKVDEITLLTINTSSSSSFRPDASKGYMVAFAGAKYAARSLPIMVADSNHIVTSFTL 143
Query: 162 VLEFNKGRLQNLHWKKDGCGACAKSSSLVCIGKQTCAFRTQSCKSQ-GPVDCSIGIQLAF 220
VLEF KGRL+N+ WKKDGC C+ S VC+ K+ CA + Q+CK+Q G VDCS+GIQLAF
Sbjct: 144 VLEFQKGRLENMFWKKDGCSKCSGDSKFVCLNKEECAIKPQNCKNQGGQVDCSLGIQLAF 203
Query: 221 SGTDKHESVLNSWYEVSNLRQYSLYGLYSNLKDTLSGQFNKFF 263
SGTDKH + LNSWYEV+NL+QYSLYGLYSNLKD+L+ F F
Sbjct: 204 SGTDKHYTALNSWYEVANLKQYSLYGLYSNLKDSLTNPFKNIF 246
>AT2G15910.1 | chr2:6932917-6935333 REVERSE LENGTH=368
Length = 367
Score = 233 bits (595), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 127/223 (56%), Positives = 156/223 (69%), Gaps = 15/223 (6%)
Query: 48 DENGVYDPCSDTRIQRGDGFSFGIAFATLGAFYSGGSVQLSPCDRRLSLASS-GQLAVFR 106
D N VY PCSDT+I +GDGF+ GIA ++ AF+ VQLSPCD RL LA+ QLA+FR
Sbjct: 144 DNNPVYSPCSDTQISKGDGFTIGIAISSKEAFFLD-QVQLSPCDTRLGLAAKMAQLALFR 202
Query: 107 PKVDEISLLTINTTTGFNPATAGGYMVAFAGRKYAARSVPTFVSNSSYTVSSFTLV---- 162
PKVDEISLL+I+T+ FNP+ AGG+MV FAG KYAARS P V++ S T+++FTLV
Sbjct: 203 PKVDEISLLSIDTSK-FNPSEAGGFMVGFAGSKYAARSYPVKVADGSNTITAFTLVMKLT 261
Query: 163 -----LEFNKGRLQNLHWKKDGCGAC--AKSSSLVCIGKQTCAFRTQSCKSQG-PVDCSI 214
LEF KG LQNL WK GC C SSS VC+ CA T CK+ G +C+I
Sbjct: 262 LSPLVLEFQKGVLQNLFWKSFGCDLCKGTGSSSSVCLNGTDCAVPTSKCKANGGQANCNI 321
Query: 215 GIQLAFSGTDKHESVLNSWYEVSNLRQYSLYGLYSNLKDTLSG 257
GIQ+AFSGTD++ LN+WYEV+NLRQYSL LY+N D+LSG
Sbjct: 322 GIQVAFSGTDRNLESLNTWYEVNNLRQYSLTDLYANAVDSLSG 364
>AT3G48630.1 | chr3:18018234-18018782 REVERSE LENGTH=129
Length = 128
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 34/48 (70%)
Query: 146 PTFVSNSSYTVSSFTLVLEFNKGRLQNLHWKKDGCGACAKSSSLVCIG 193
P F++NS++ V+SFT V+EF KGRLQNL+WK+D C + V +G
Sbjct: 17 PAFIANSTFIVTSFTWVMEFQKGRLQNLYWKRDVCAKAGEVQWAVVLG 64
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.133 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,051,001
Number of extensions: 192363
Number of successful extensions: 417
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 404
Number of HSP's successfully gapped: 4
Length of query: 263
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 166
Effective length of database: 8,447,217
Effective search space: 1402238022
Effective search space used: 1402238022
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)