BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0635100 Os03g0635100|AB120662
         (93 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G22942.1  | chr3:8134475-8135667 FORWARD LENGTH=101             75   6e-15
AT3G63420.1  | chr3:23417383-23418405 FORWARD LENGTH=99            68   8e-13

>AT3G22942.1 | chr3:8134475-8135667 FORWARD LENGTH=101
          Length = 100

 Score = 75.5 bits (184), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 47/78 (60%)

Query: 16  HRIQAELKKXXXXXXXXXXXXXXXDKTDKVSAALQELMVTAESKADPLLPVTTGPACQSW 75
           HRIQAELK+               +K D  SA+ +E + + +SK DPLLP TTGP   +W
Sbjct: 23  HRIQAELKRLEQEARFLEEELEQLEKMDNASASCKEFLDSVDSKPDPLLPETTGPVNATW 82

Query: 76  DRWFEGPQDLRRCKCWFL 93
           D+WFEGP++ +RC C  L
Sbjct: 83  DQWFEGPKEAKRCGCSIL 100



>AT3G63420.1 | chr3:23417383-23418405 FORWARD LENGTH=99
          Length = 98

 Score = 68.2 bits (165), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 38/78 (48%)

Query: 16 HRIQAELKKXXXXXXXXXXXXXXXDKTDKVSAALQELMVTAESKADPLLPVTTGPACQSW 75
          HRI AEL +               + TD VS   +EL+   E   DPLLP+T GP    W
Sbjct: 21 HRILAELARVEQEVAFLEKELKEVENTDIVSTVCEELLSVIEKGPDPLLPLTNGPLNLGW 80

Query: 76 DRWFEGPQDLRRCKCWFL 93
          DRWFEGP     C+C  L
Sbjct: 81 DRWFEGPNGGEGCRCLIL 98



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.132    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,276,347
Number of extensions: 31764
Number of successful extensions: 68
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 2
Length of query: 93
Length of database: 11,106,569
Length adjustment: 64
Effective length of query: 29
Effective length of database: 9,351,945
Effective search space: 271206405
Effective search space used: 271206405
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)