BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0633400 Os03g0633400|Os03g0633400
         (600 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G54650.1  | chr3:20226004-20228882 REVERSE LENGTH=594          432   e-121
AT4G15475.1  | chr4:8845927-8848701 FORWARD LENGTH=611             54   2e-07

>AT3G54650.1 | chr3:20226004-20228882 REVERSE LENGTH=594
          Length = 593

 Score =  432 bits (1112), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/464 (50%), Positives = 299/464 (64%), Gaps = 19/464 (4%)

Query: 141 MAEVLRRLGPRGVMAAAAVSRGWRDCAGRVWXXXXXXXXXX---XGVSLVGALLPRCPAL 197
           + EVL+RL P  ++ AA V +GWR+ + ++W               +  +G+LL +CP L
Sbjct: 140 LWEVLKRLPPSSLLMAARVCKGWRETSRKMWKAAEELRIRVPERAQIGYIGSLLQKCPRL 199

Query: 198 SRLSLRMESDVDATILACLAFSCPSLGTLEISMSDNAVNRMTGEELSRFVSEKHSLSVLK 257
            RLSL++ESD DAT LAC+AFSCP+L  LEI+ S  AVNR++G+ELSRFV+ K  L+ LK
Sbjct: 200 IRLSLKIESDFDATTLACIAFSCPNLEVLEITTSGAAVNRISGDELSRFVANKRGLTSLK 259

Query: 258 IXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSVINCPNMSEISLCFTQQSNDCTDLVTLMD 317
           +                            K + NCPN++EISL F++Q +D TDLVT++D
Sbjct: 260 MEGCSNLGGFSLSSSSLSTLWLSDLHSLSKMIFNCPNLTEISLEFSRQEDDSTDLVTMVD 319

Query: 318 GLGRTCPNLKNMHISSAQLSNEAVFALEGASLRGLCMLSLILGSKITDAAVASIVRSCAS 377
           GLGRTC  L+N+HI+S +LS+  V +L   + R L MLSL+LG  ITDA+VA+I     +
Sbjct: 320 GLGRTCTRLQNIHIASLKLSHTVVLSLTAVNFRYLRMLSLVLGINITDASVAAISSGYKN 379

Query: 378 LELLDLSGSSISDNGVGMICKAFPHTLSRLLLALCPNVTTCGIQFATAQLPLLQLMDCGM 437
           LELLDLSGSSI+D G+GMIC   P TLS+LL+ALCPN+T+ GIQFATAQLPLL+LMDCGM
Sbjct: 380 LELLDLSGSSITDTGLGMICDVLPDTLSKLLVALCPNITSSGIQFATAQLPLLELMDCGM 439

Query: 438 TLCASLQNEKQGPYFGEINGAIRFCPKLPTSKKQSTNQKLIIKHGNLKKLSLWGCSAIDA 497
           T+          P F E              K    NQK+ IKH  LKKLSLWGCS++DA
Sbjct: 440 TVS---DPNSDNPTFVE---------NPSPHKTPGYNQKMFIKHKRLKKLSLWGCSSLDA 487

Query: 498 LYLNCPELNDLNLNSCTNLNPERLLLQCPKLKNVHASGCHDMLIGAIRNQVLNEFAAAEP 557
           L+LNCPEL DLNLN C+NL+PE L+LQCPKL+ V+ASGC  +L GAIR QV   F+A E 
Sbjct: 488 LFLNCPELMDLNLNLCSNLHPESLVLQCPKLQLVYASGCQGLLTGAIRKQVSENFSAGEN 547

Query: 558 HLPCKRLADGSKRVQLPQFAQQEPSQD----KKGIDLRRNQCTV 597
           H+P KRLAD SKR+Q      QE  +D     K   L +  CT+
Sbjct: 548 HMPRKRLADASKRIQALPSLYQETREDGIYAGKRRKLEKEMCTI 591



>AT4G15475.1 | chr4:8845927-8848701 FORWARD LENGTH=611
          Length = 610

 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 126/320 (39%), Gaps = 47/320 (14%)

Query: 288 SVINCPNMSEISLCFTQQSNDCTDLVTL-----------MDGLGRTCPNLKNMHISSAQ- 335
           S+I CPN+S + LC   Q   CT L +L           +  +G+ C  L+ +++   + 
Sbjct: 146 SLIWCPNVSSVGLCSLAQK--CTSLKSLDLQGCYVGDQGLAAVGKFCKQLEELNLRFCEG 203

Query: 336 LSNEAVFALEGASLRGLCMLSLILGSKITDAAVASIVRSCASLELLDLSGSSISDNGVGM 395
           L++  V  L     + L  + +   +KITD ++ ++   C  LE+L L    I D G+  
Sbjct: 204 LTDVGVIDLVVGCSKSLKSIGVAASAKITDLSLEAVGSHCKLLEVLYLDSEYIHDKGLIA 263

Query: 396 ICKAFPHTLSRLLLALCPNVTTCGIQFATAQLPLLQLMDCGMTLCASLQNEKQGPYFGEI 455
           + +   H L  L L  C +VT   + FA               LC SL+      +    
Sbjct: 264 VAQG-CHRLKNLKLQ-CVSVTD--VAFAAVG-----------ELCTSLERLALYSFQHFT 308

Query: 456 NGAIRFCPKLPTSKKQSTNQKLIIKHGNLKKLSLWGCSAIDALYLNCPELNDLNLNSCTN 515
           +  +R   K   SKK        +K   L       C  ++A+   C EL  + +N C N
Sbjct: 309 DKGMRAIGK--GSKK--------LKDLTLSDCYFVSCKGLEAIAHGCKELERVEINGCHN 358

Query: 516 LNP---ERLLLQCPKLKNVHASGCHDMLIGAIRNQVLNEFAAAEPHLPCKRLADGSKRVQ 572
           +     E +   CP+LK +    C       I N  L E       L    L D S    
Sbjct: 359 IGTRGIEAIGKSCPRLKELALLYCQ-----RIGNSALQEIGKGCKSLEILHLVDCSGIGD 413

Query: 573 LPQFAQQEPSQDKKGIDLRR 592
           +   +  +  ++ K + +RR
Sbjct: 414 IAMCSIAKGCRNLKKLHIRR 433



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.134    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,492,623
Number of extensions: 327370
Number of successful extensions: 1425
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1417
Number of HSP's successfully gapped: 4
Length of query: 600
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 496
Effective length of database: 8,255,305
Effective search space: 4094631280
Effective search space used: 4094631280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 115 (48.9 bits)