BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0620400 Os03g0620400|AK102169
(519 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G33280.1 | chr4:16047357-16049310 REVERSE LENGTH=338 65 9e-11
AT4G01580.1 | chr4:685791-686668 FORWARD LENGTH=191 60 2e-09
AT3G18960.1 | chr3:6542618-6543568 FORWARD LENGTH=210 60 3e-09
AT3G18990.1 | chr3:6549077-6551568 REVERSE LENGTH=342 55 1e-07
AT5G66980.1 | chr5:26741563-26742826 FORWARD LENGTH=335 53 5e-07
>AT4G33280.1 | chr4:16047357-16049310 REVERSE LENGTH=338
Length = 337
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 55/106 (51%), Gaps = 7/106 (6%)
Query: 37 FGHSMTIPNKFLDHFGGTLSRTIELVSPKGIVYIVKVTEHMNKTI-LQCGWEAFVDAHHI 95
F + + IP KF H L + + L SP G+ Y V V E KT+ + GW+ FV H +
Sbjct: 33 FHNRLVIPRKFSTHCKRKLPQIVTLKSPSGVTYNVGVEEDDEKTMAFRFGWDKFVKDHSL 92
Query: 96 EENDSLLFRHIENSRFEVLILDSDG-CEK-----VFTCAGIKKTSS 135
EEND L+F+ S FEVL+ D CEK V C +KT +
Sbjct: 93 EENDLLVFKFHGVSEFEVLVFDGQTLCEKPTSYFVRKCGHAEKTKA 138
>AT4G01580.1 | chr4:685791-686668 FORWARD LENGTH=191
Length = 190
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 27 KCFHLQMSANFGHSMT-IPNKFLDHFGGTLSRTIELVSPKGIVYIVKVTEHMNKTILQCG 85
K F L + + M IP +F+ G LS + LV+P G +K+ + G
Sbjct: 29 KFFKLVLPSTMKDKMMRIPPRFVKLQGSKLSEVVTLVTPAGYKRSIKLKRIGEEIWFHEG 88
Query: 86 WEAFVDAHHIEENDSLLFRHIENSRFEVLILDSDGCEKVFTCAGI 130
W F +AH IEE LLF + +NS F V+I ++ CE + +
Sbjct: 89 WSEFAEAHSIEEGHFLLFEYKKNSSFRVIIFNASACETNYPLDAV 133
>AT3G18960.1 | chr3:6542618-6543568 FORWARD LENGTH=210
Length = 209
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%)
Query: 41 MTIPNKFLDHFGGTLSRTIELVSPKGIVYIVKVTEHMNKTILQCGWEAFVDAHHIEENDS 100
M IP +F+ G LS + L +P G +K+ + GW F +AH IEE
Sbjct: 44 MKIPPRFVKLQGSKLSEVVTLETPAGFKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEGHF 103
Query: 101 LLFRHIENSRFEVLILDSDGCEKVFTCAGI 130
LLF + ENS F V+I + CE + +
Sbjct: 104 LLFEYKENSSFRVIIFNVSACETKYPLDAV 133
>AT3G18990.1 | chr3:6549077-6551568 REVERSE LENGTH=342
Length = 341
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%)
Query: 41 MTIPNKFLDHFGGTLSRTIELVSPKGIVYIVKVTEHMNKTILQCGWEAFVDAHHIEENDS 100
+ +P+KF+ F LS + L P G V+ V + + NK Q GW+ FVD + I
Sbjct: 20 LRVPDKFVSKFKDELSVAVALTVPDGHVWRVGLRKADNKIWFQDGWQEFVDRYSIRIGYL 79
Query: 101 LLFRHIENSRFEVLILDSDGCEKVFTCAGI 130
L+FR+ NS F V I + E + G+
Sbjct: 80 LIFRYEGNSAFSVYIFNLSHSEINYHSTGL 109
>AT5G66980.1 | chr5:26741563-26742826 FORWARD LENGTH=335
Length = 334
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 4/129 (3%)
Query: 22 LNGKMKCFHLQMSANFGHSMTIPNKFLDHFGGTLSRTIELVSPKGIVYIVKV----TEHM 77
L+ ++ F + + H + IP F+D L + LV G ++ V+ TE
Sbjct: 4 LSKDLQFFKVFLPEFGSHELVIPPAFIDMLEKPLPKEAFLVDEIGRLWCVETKTEDTEER 63
Query: 78 NKTILQCGWEAFVDAHHIEENDSLLFRHIENSRFEVLILDSDGCEKVFTCAGIKKTSSVQ 137
GW++F + +E D L+F + +SRF V I +DGC+K S V
Sbjct: 64 FCVFFTKGWQSFANDQSLEFGDFLVFSYDGDSRFSVTIFANDGCKKDVGVVSTTDRSRVS 123
Query: 138 ERNAAPVDI 146
P DI
Sbjct: 124 LDEEEPDDI 132
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.133 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,999,648
Number of extensions: 450126
Number of successful extensions: 1304
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1315
Number of HSP's successfully gapped: 5
Length of query: 519
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 416
Effective length of database: 8,282,721
Effective search space: 3445611936
Effective search space used: 3445611936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)