BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0609500 Os03g0609500|Os03g0609500
(232 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G67420.1 | chr5:26904576-26905415 REVERSE LENGTH=251 177 6e-45
AT3G49940.1 | chr3:18514465-18515302 FORWARD LENGTH=248 171 3e-43
AT4G37540.1 | chr4:17639649-17640509 REVERSE LENGTH=241 170 5e-43
AT1G67100.1 | chr1:25053801-25054659 FORWARD LENGTH=234 161 3e-40
AT3G02550.1 | chr3:536747-537650 REVERSE LENGTH=264 157 5e-39
AT1G68510.1 | chr1:25707033-25708004 FORWARD LENGTH=234 155 1e-38
AT2G23660.1 | chr2:10060242-10061177 REVERSE LENGTH=312 54 5e-08
AT5G66870.1 | chr5:26706621-26707562 FORWARD LENGTH=314 54 5e-08
AT1G31320.1 | chr1:11213107-11214032 FORWARD LENGTH=173 53 1e-07
AT2G28500.1 | chr2:12186603-12188110 REVERSE LENGTH=233 51 6e-07
AT2G31310.1 | chr2:13352985-13353653 FORWARD LENGTH=189 50 9e-07
AT2G45410.1 | chr2:18712449-18713108 REVERSE LENGTH=192 48 4e-06
>AT5G67420.1 | chr5:26904576-26905415 REVERSE LENGTH=251
Length = 250
Score = 177 bits (448), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 78/110 (70%), Positives = 96/110 (87%)
Query: 1 MSCNGCRVLRKGCSDACVLRPSIEWIDGAQPQANATVFVAKFFGRAGLVASLAAVPLHHR 60
MSCNGCRVLRKGCS+ C+LRP I+WI+ A Q +ATVFVAKFFGRAGL++ ++AVP R
Sbjct: 1 MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISAVPDSQR 60
Query: 61 PALFRSLLYEACGRTINPVSGAIGLMWTGNWDLCQAAADAVLRGDSLRAL 110
PALF+SLLYEACGRT+NPV+GAIG++WTGNW++CQAA + VLRG SLR +
Sbjct: 61 PALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSLRPI 110
>AT3G49940.1 | chr3:18514465-18515302 FORWARD LENGTH=248
Length = 247
Score = 171 bits (434), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 75/110 (68%), Positives = 95/110 (86%)
Query: 1 MSCNGCRVLRKGCSDACVLRPSIEWIDGAQPQANATVFVAKFFGRAGLVASLAAVPLHHR 60
MSCNGCRVLRKGCS+ C+LRP I+WI+ + Q +ATVFVAKFFGRAGL++ ++AVP
Sbjct: 1 MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQC 60
Query: 61 PALFRSLLYEACGRTINPVSGAIGLMWTGNWDLCQAAADAVLRGDSLRAL 110
PALF+SLLYEACGRT+NPV+GA+GL+WTGNW++CQAA + VLRG SL+ +
Sbjct: 61 PALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVETVLRGGSLKPI 110
>AT4G37540.1 | chr4:17639649-17640509 REVERSE LENGTH=241
Length = 240
Score = 170 bits (431), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 73/111 (65%), Positives = 96/111 (86%)
Query: 1 MSCNGCRVLRKGCSDACVLRPSIEWIDGAQPQANATVFVAKFFGRAGLVASLAAVPLHHR 60
MSCNGCRVLRKGCS+ C+LRP ++WI+ A+ Q +ATVFVAKFFGRAGL++ +++VP R
Sbjct: 1 MSCNGCRVLRKGCSETCILRPCLQWIESAESQGHATVFVAKFFGRAGLMSFISSVPELQR 60
Query: 61 PALFRSLLYEACGRTINPVSGAIGLMWTGNWDLCQAAADAVLRGDSLRALS 111
PALF+SLL+EACGRT+NPV+GA+G++WT NW +CQAA + VLRG +LR +S
Sbjct: 61 PALFQSLLFEACGRTVNPVNGAVGMLWTRNWHVCQAAVETVLRGGTLRPIS 111
>AT1G67100.1 | chr1:25053801-25054659 FORWARD LENGTH=234
Length = 233
Score = 161 bits (407), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 70/104 (67%), Positives = 87/104 (83%)
Query: 1 MSCNGCRVLRKGCSDACVLRPSIEWIDGAQPQANATVFVAKFFGRAGLVASLAAVPLHHR 60
MSCNGCRVLRKGCS+ C +RP ++WI A+ QANATVF+AKF+GRAGL+ L P H R
Sbjct: 3 MSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDHLR 62
Query: 61 PALFRSLLYEACGRTINPVSGAIGLMWTGNWDLCQAAADAVLRG 104
PA+FRSLLYEACGR +NP+ G++GL+W+GNW LCQAA +AV+RG
Sbjct: 63 PAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRG 106
>AT3G02550.1 | chr3:536747-537650 REVERSE LENGTH=264
Length = 263
Score = 157 bits (396), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 65/111 (58%), Positives = 89/111 (80%)
Query: 1 MSCNGCRVLRKGCSDACVLRPSIEWIDGAQPQANATVFVAKFFGRAGLVASLAAVPLHHR 60
MSCNGCRVLRKGCS+ C +RP + WI + QANATVF+AKF+GRAGL+ + A P H R
Sbjct: 3 MSCNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNHLR 62
Query: 61 PALFRSLLYEACGRTINPVSGAIGLMWTGNWDLCQAAADAVLRGDSLRALS 111
P +FRSLL+EACGR +NP+ G++GL+W+GNW LCQ A +AV++G+ ++ ++
Sbjct: 63 PGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKGEPVKEIA 113
>AT1G68510.1 | chr1:25707033-25708004 FORWARD LENGTH=234
Length = 233
Score = 155 bits (393), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 68/104 (65%), Positives = 84/104 (80%)
Query: 1 MSCNGCRVLRKGCSDACVLRPSIEWIDGAQPQANATVFVAKFFGRAGLVASLAAVPLHHR 60
+SCNGCRVLRKGC+ C +RP ++WI A QANAT+F+AKF+GRAGL+ + + P H R
Sbjct: 3 ISCNGCRVLRKGCNQDCTIRPCLQWIKSADSQANATLFLAKFYGRAGLLNLIESGPDHLR 62
Query: 61 PALFRSLLYEACGRTINPVSGAIGLMWTGNWDLCQAAADAVLRG 104
PA+FRSLLYEACGR +NPV G++GLMW+GNW CQAA DAVL G
Sbjct: 63 PAIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQAAVDAVLNG 106
>AT2G23660.1 | chr2:10060242-10061177 REVERSE LENGTH=312
Length = 311
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Query: 3 CNGCRVLRKGCSDACVLRPSIEWIDGAQPQANATVFVAKFFGRAGLVASLAAVPLHHRPA 62
C C++LR+ C+ CV P + PQ +FV + FG + + L +P R
Sbjct: 6 CAACKLLRRKCTQECVFAP---YFPPTNPQK--FIFVHRVFGASNVTKILNDLPPDQRED 60
Query: 63 LFRSLLYEACGRTINPVSGAIGLMWTGNWDLCQAAADAVLRGDSL 107
SL YEA R +P+ G +GL+ L + D + + L
Sbjct: 61 TVNSLFYEAEARIRDPIYGCVGLISFLQQYLKKIQQDLLTAKEEL 105
>AT5G66870.1 | chr5:26706621-26707562 FORWARD LENGTH=314
Length = 313
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Query: 3 CNGCRVLRKGCSDACVLRPSIEWIDGAQPQANATVFVAKFFGRAGLVASLAAVPLHHRPA 62
C C+ LR+ C+ CV P + QPQ A FV K FG + + L + + R
Sbjct: 8 CAACKFLRRKCTQECVFAP---YFPPDQPQKFA--FVHKVFGASNVAKLLNELASNQRED 62
Query: 63 LFRSLLYEACGRTINPVSGAIGLMWTGNWDLCQAAAD 99
SL YEA R +PV G +GL+ L Q D
Sbjct: 63 AVNSLFYEAEARLRDPVYGCVGLISILQHRLKQVNHD 99
>AT1G31320.1 | chr1:11213107-11214032 FORWARD LENGTH=173
Length = 172
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 3 CNGCRVLRKGCSDACVLRPSIEWIDGAQPQANATVFVAKFFGRAGLVASLAAVPLHHRPA 62
C C++LR+ C+ CV P + +PQ A V + FG + + L +P+H R
Sbjct: 14 CAACKLLRRRCAQDCVFSP---YFPADEPQKFANVH--RVFGASNVNKMLQELPIHQRGD 68
Query: 63 LFRSLLYEACGRTINPVSGAIG 84
S++YEA R +PV G +G
Sbjct: 69 AVSSMVYEANARVRDPVYGCVG 90
>AT2G28500.1 | chr2:12186603-12188110 REVERSE LENGTH=233
Length = 232
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 3 CNGCRVLRKGCSDACVLRPSIEWIDGAQPQANATVFVAKFFGRAGLVASLAAVPLHHRPA 62
C C++LR+ C+D CVL P D A+ + FG + ++ L +P R
Sbjct: 56 CAACKILRRRCADKCVLAPYFPPTDPAK-----FTIAHRVFGASNIIKFLQELPESQRTD 110
Query: 63 LFRSLLYEACGRTINPVSGAIGLMW 87
S++YEA R +PV G G ++
Sbjct: 111 AVNSMVYEAGARMRDPVYGCAGAIY 135
>AT2G31310.1 | chr2:13352985-13353653 FORWARD LENGTH=189
Length = 188
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Query: 3 CNGCRVLRKGCSDACVLRPSIEWIDGAQPQANATVFVAKFFGRAGLVASLAAVPLHHRPA 62
C GC+ LR+ C + CV P + +G+ A + K FG + ++ +P H R
Sbjct: 8 CGGCKFLRRKCVEGCVFAPYFCYEEGSSNFAA----IHKVFGASNFSKLISHLPDHDRCD 63
Query: 63 LFRSLLYEACGRTINPVSGAIGLMWTGNWDLCQAAADAVL 102
R++ YEA R +P+ G + +++ + A VL
Sbjct: 64 AVRTISYEAHSRLHDPIYGCVSQIFSLQQQVVSLQAQVVL 103
>AT2G45410.1 | chr2:18712449-18713108 REVERSE LENGTH=192
Length = 191
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 5 GCRVLRKGCSDACVLRPSIEWIDGAQPQANATVFVAKFFGRAGLVASLAAVPLHHRPALF 64
C+ LR+ C CV P + D Q A V K FG + L +PLH R
Sbjct: 19 ACKFLRRKCVKGCVFAP---YFDAEQGTARFAA-VHKVFGASNASKMLLRLPLHKRLDAV 74
Query: 65 RSLLYEACGRTINPVSGAIGLMWTGNWDLCQAAAD 99
+L YEA R +PV G++G +++ + A+
Sbjct: 75 VTLCYEAMARIRDPVYGSVGHLFSLQHQVMNLQAE 109
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.135 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,441,948
Number of extensions: 159691
Number of successful extensions: 500
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 516
Number of HSP's successfully gapped: 12
Length of query: 232
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 137
Effective length of database: 8,502,049
Effective search space: 1164780713
Effective search space used: 1164780713
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)