BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0607700 Os03g0607700|AK059013
(245 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G24625.1 | chr1:8726009-8726638 REVERSE LENGTH=210 73 1e-13
AT1G80730.1 | chr1:30339493-30340179 REVERSE LENGTH=229 68 5e-12
AT1G66140.1 | chr1:24620063-24620845 REVERSE LENGTH=261 68 5e-12
AT5G10970.1 | chr5:3469268-3470086 FORWARD LENGTH=273 66 2e-11
AT5G25160.1 | chr5:8687524-8688231 FORWARD LENGTH=236 65 2e-11
AT5G57520.1 | chr5:23296019-23296471 FORWARD LENGTH=151 64 8e-11
AT5G14010.1 | chr5:4522260-4522745 FORWARD LENGTH=162 62 2e-10
AT3G58070.1 | chr3:21506845-21507606 REVERSE LENGTH=254 61 4e-10
AT5G01860.1 | chr5:335630-336277 FORWARD LENGTH=216 58 4e-09
AT2G41940.1 | chr2:17507556-17508329 FORWARD LENGTH=258 55 2e-08
AT5G27880.1 | chr5:9885908-9886744 FORWARD LENGTH=279 54 7e-08
AT5G06650.1 | chr5:2043486-2044061 FORWARD LENGTH=192 54 9e-08
AT1G67030.1 | chr1:25016644-25017237 FORWARD LENGTH=198 53 2e-07
AT5G05120.1 | chr5:1511232-1511837 FORWARD LENGTH=202 52 2e-07
AT2G42410.1 | chr2:17658150-17658794 FORWARD LENGTH=215 51 6e-07
AT5G48890.1 | chr5:19820353-19820874 FORWARD LENGTH=174 50 8e-07
AT1G68360.1 | chr1:25621678-25622412 REVERSE LENGTH=245 50 9e-07
AT4G17810.1 | chr4:9906918-9907532 FORWARD LENGTH=205 49 3e-06
AT5G06070.1 | chr5:1828426-1829106 REVERSE LENGTH=227 47 9e-06
>AT1G24625.1 | chr1:8726009-8726638 REVERSE LENGTH=210
Length = 209
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 79 KVFSCNFCMRKFFSSQALGGHQNAHKRERSAAKRTPSSSPYHLHHHR-MMMAGAGLPLEA 137
+VFSCN+C RKF+SSQALGGHQNAHKRER+ AKR HHHR + L ++A
Sbjct: 57 RVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRAMHMGRMFGHHHRPYTYTSSSLGMQA 116
Query: 138 HAAFMRAAL 146
H+ + L
Sbjct: 117 HSGLLHHTL 125
>AT1G80730.1 | chr1:30339493-30340179 REVERSE LENGTH=229
Length = 228
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 32/34 (94%)
Query: 79 KVFSCNFCMRKFFSSQALGGHQNAHKRERSAAKR 112
+VFSCN+C RKF+SSQALGGHQNAHKRER+ AKR
Sbjct: 66 RVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR 99
>AT1G66140.1 | chr1:24620063-24620845 REVERSE LENGTH=261
Length = 260
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 32/34 (94%)
Query: 79 KVFSCNFCMRKFFSSQALGGHQNAHKRERSAAKR 112
+VFSCN+C RKF+SSQALGGHQNAHKRER+ AKR
Sbjct: 83 RVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR 116
>AT5G10970.1 | chr5:3469268-3470086 FORWARD LENGTH=273
Length = 272
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 79 KVFSCNFCMRKFFSSQALGGHQNAHKRERSAAKR 112
K+FSCN+C R F+SSQALGGHQNAHKRER+ AKR
Sbjct: 102 KLFSCNYCQRTFYSSQALGGHQNAHKRERTLAKR 135
>AT5G25160.1 | chr5:8687524-8688231 FORWARD LENGTH=236
Length = 235
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 79 KVFSCNFCMRKFFSSQALGGHQNAHKRERSAAKR 112
K+FSCN+C R F+SSQALGGHQNAHKRER+ AKR
Sbjct: 59 KLFSCNYCQRTFYSSQALGGHQNAHKRERTLAKR 92
>AT5G57520.1 | chr5:23296019-23296471 FORWARD LENGTH=151
Length = 150
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 32/35 (91%)
Query: 79 KVFSCNFCMRKFFSSQALGGHQNAHKRERSAAKRT 113
+VFSCN+C RKF+SSQALGGHQNAHK ER+ AK++
Sbjct: 50 RVFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKS 84
>AT5G14010.1 | chr5:4522260-4522745 FORWARD LENGTH=162
Length = 161
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 31/35 (88%)
Query: 79 KVFSCNFCMRKFFSSQALGGHQNAHKRERSAAKRT 113
++F C +C RKF++SQALGGHQNAHKRER+AA+R
Sbjct: 36 RLFPCQYCPRKFYTSQALGGHQNAHKRERAAARRN 70
>AT3G58070.1 | chr3:21506845-21507606 REVERSE LENGTH=254
Length = 253
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 10/82 (12%)
Query: 78 NKVFSCNFCMRKFFSSQALGGHQNAHKRERSAAKRT-------PSSSPYHLHHHRMMMAG 130
N+ F C++C R F +SQALGGHQNAHKRER AKR P ++PY H+ G
Sbjct: 88 NRRFECHYCFRNFPTSQALGGHQNAHKRERQLAKRGVSSYFYHPDNNPYSYRHYPSWTNG 147
Query: 131 AGLPLEAHAAFMRAALRVNPAG 152
PL A ++ + P+G
Sbjct: 148 ---PLTAARSYGGFSSGPKPSG 166
>AT5G01860.1 | chr5:335630-336277 FORWARD LENGTH=216
Length = 215
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 30/34 (88%)
Query: 79 KVFSCNFCMRKFFSSQALGGHQNAHKRERSAAKR 112
+VF+C FC ++F +SQALGGHQNAHK+ERS AKR
Sbjct: 65 RVFACTFCKKEFSTSQALGGHQNAHKQERSLAKR 98
>AT2G41940.1 | chr2:17507556-17508329 FORWARD LENGTH=258
Length = 257
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/32 (71%), Positives = 26/32 (81%)
Query: 81 FSCNFCMRKFFSSQALGGHQNAHKRERSAAKR 112
F C++C R F +SQALGGHQNAHKRER AKR
Sbjct: 95 FECHYCFRNFPTSQALGGHQNAHKRERQHAKR 126
>AT5G27880.1 | chr5:9885908-9886744 FORWARD LENGTH=279
Length = 278
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 29/35 (82%)
Query: 78 NKVFSCNFCMRKFFSSQALGGHQNAHKRERSAAKR 112
NK+++C+FC + F +SQALGGHQNAHK+ER K+
Sbjct: 77 NKIYTCHFCKKGFSTSQALGGHQNAHKQEREWDKK 111
>AT5G06650.1 | chr5:2043486-2044061 FORWARD LENGTH=192
Length = 191
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 26/34 (76%)
Query: 79 KVFSCNFCMRKFFSSQALGGHQNAHKRERSAAKR 112
K F C++C R F +SQALGGHQNAHKRER KR
Sbjct: 53 KRFKCHYCFRNFPTSQALGGHQNAHKRERQQTKR 86
>AT1G67030.1 | chr1:25016644-25017237 FORWARD LENGTH=198
Length = 197
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 8/65 (12%)
Query: 78 NKVFSCNFCMRKFFSSQALGGHQNAHKRERSAAKRT--------PSSSPYHLHHHRMMMA 129
++ + C +C R+F +SQALGGHQNAHK+ER KR P +H H + ++ A
Sbjct: 38 SRKYECQYCCREFANSQALGGHQNAHKKERQLLKRAQMLATRGLPRHHNFHPHTNPLLSA 97
Query: 130 GAGLP 134
A LP
Sbjct: 98 FAPLP 102
>AT5G05120.1 | chr5:1511232-1511837 FORWARD LENGTH=202
Length = 201
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 26/35 (74%)
Query: 78 NKVFSCNFCMRKFFSSQALGGHQNAHKRERSAAKR 112
N ++ C +C RKF +QALGGHQNAH++ER K+
Sbjct: 24 NPIYKCKYCPRKFDKTQALGGHQNAHRKEREVEKQ 58
>AT2G42410.1 | chr2:17658150-17658794 FORWARD LENGTH=215
Length = 214
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Query: 79 KVFSCNFCMRKFFSSQALGGHQNAHKRERSAAKRTPSSSPYHLHHH 124
K ++C+FC R+F S+QALGGH N H+R+R+ ++ PS + HHH
Sbjct: 47 KNYTCSFCRREFRSAQALGGHMNVHRRDRAKLRQIPSWL-FEPHHH 91
>AT5G48890.1 | chr5:19820353-19820874 FORWARD LENGTH=174
Length = 173
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 21/28 (75%), Positives = 24/28 (85%)
Query: 79 KVFSCNFCMRKFFSSQALGGHQNAHKRE 106
++F C FC RKF SSQALGGHQNAHK+E
Sbjct: 33 RIFPCLFCSRKFHSSQALGGHQNAHKKE 60
>AT1G68360.1 | chr1:25621678-25622412 REVERSE LENGTH=245
Length = 244
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 25/32 (78%)
Query: 81 FSCNFCMRKFFSSQALGGHQNAHKRERSAAKR 112
+ C +C R+F +SQALGGHQNAHK+ER KR
Sbjct: 73 YECQYCCREFGNSQALGGHQNAHKKERQQLKR 104
>AT4G17810.1 | chr4:9906918-9907532 FORWARD LENGTH=205
Length = 204
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 28/33 (84%)
Query: 79 KVFSCNFCMRKFFSSQALGGHQNAHKRERSAAK 111
+ ++CNFC R+F S+QALGGH N H+R+R++++
Sbjct: 44 RSYTCNFCRREFRSAQALGGHMNVHRRDRASSR 76
>AT5G06070.1 | chr5:1828426-1829106 REVERSE LENGTH=227
Length = 226
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 31/40 (77%), Gaps = 3/40 (7%)
Query: 81 FSCNFCMRKFFSSQALGGHQNAHKRERSAAKR---TPSSS 117
+SC+FC R+F S+QALGGH N H+R+R+ K+ +PSS+
Sbjct: 55 YSCSFCGREFKSAQALGGHMNVHRRDRARLKQQSLSPSST 94
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.131 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,309,776
Number of extensions: 92725
Number of successful extensions: 409
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 409
Number of HSP's successfully gapped: 22
Length of query: 245
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 149
Effective length of database: 8,474,633
Effective search space: 1262720317
Effective search space used: 1262720317
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)