BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0604200 Os03g0604200|J075140M08
(482 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G15490.1 | chr5:5027872-5029314 REVERSE LENGTH=481 856 0.0
AT3G29360.1 | chr3:11267375-11268817 REVERSE LENGTH=481 844 0.0
AT5G39320.1 | chr5:15743254-15744696 FORWARD LENGTH=481 842 0.0
AT1G26570.1 | chr1:9182801-9184246 FORWARD LENGTH=482 791 0.0
AT3G01010.1 | chr3:4342-4818 FORWARD LENGTH=159 257 1e-68
>AT5G15490.1 | chr5:5027872-5029314 REVERSE LENGTH=481
Length = 480
Score = 856 bits (2211), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/482 (82%), Positives = 447/482 (92%), Gaps = 2/482 (0%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPDVEVVVVDISAPRIEGWNSERLPIYEPGLDDVVRQ 60
MVKICCIGAGYVGGPTMAVIALKCP VEV VVDIS PRI WNS++LPIYEPGLDDVV+Q
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPSVEVAVVDISVPRINAWNSDQLPIYEPGLDDVVKQ 60
Query: 61 CRGRNLFFSTDVERHVADAGIVFVSVNTPTKTRGLGAGKAADLTYWESAARIIADVSRSD 120
CRG+NLFFSTDVE+HV +A IVFVSVNTPTKTRGLGAGKAADLTYWESAAR+IADVS SD
Sbjct: 61 CRGKNLFFSTDVEKHVREADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSVSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILAHNSKGGNIRYQILSNPEFLAEGTAIQDLFSPDRVLIGG 180
KIVVEKSTVPVKTAEAIEKIL HNSKG I++QILSNPEFLAEGTAI+DLF PDRVLIGG
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKG--IKFQILSNPEFLAEGTAIEDLFMPDRVLIGG 178
Query: 181 RETPEGRAAVAALKSIYARWVPDDRIITTNLWSAELSKLAANAFLAQRISSVNAISALCE 240
RET EG AAV ALK IYA+WVP++RI+TTNLWSAELSKLAANAFLAQRISSVNA+SALCE
Sbjct: 179 RETTEGFAAVKALKDIYAQWVPEERILTTNLWSAELSKLAANAFLAQRISSVNAMSALCE 238
Query: 241 ATGADVTEVANSIGKDSRIGPRFLSASVGFGGSCFQKDILNLVYICECYGLPEVANYWHQ 300
ATGA+V+EV+ ++GKDSRIGP+FL++SVGFGGSCFQKDILNLVYICEC GLPEVA YW Q
Sbjct: 239 ATGANVSEVSYAVGKDSRIGPKFLNSSVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQ 298
Query: 301 VIRINDYQKSRFVNRVVSSMFNTVAGKKVAVLGFAFKKDTGDTRETPAIDVCKGLVGDKA 360
VI+INDYQK+RFVNR+VSSMFNTV+ KK+AVLGFAFKKDTGDTRETPAIDVCKGL+GDKA
Sbjct: 299 VIKINDYQKTRFVNRIVSSMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKA 358
Query: 361 VVSIYDPQVTEEQVQRDLVMNKFDWDHPRHLQPMSPSSAKHVAVSWDAYEAARGAHAVCI 420
+SIYDPQVTEEQ+QRDL MNKFDWDHP HLQPMSP++ K V+V+WDAY A + AH +CI
Sbjct: 359 RLSIYDPQVTEEQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVAWDAYTATKDAHGICI 418
Query: 421 LTEWDEFRRLDYQRMYDAMHKPAFLFDGRNVVDPDKLRRIGFVVYSIGKPLDHWLRDMPA 480
LTEWDEF++LD+QR+++ M KPAF+FDGRNVVD DKLR IGF+VYSIGKPLD WL+DMPA
Sbjct: 419 LTEWDEFKKLDFQRIFENMQKPAFVFDGRNVVDADKLREIGFIVYSIGKPLDQWLKDMPA 478
Query: 481 VA 482
+A
Sbjct: 479 LA 480
>AT3G29360.1 | chr3:11267375-11268817 REVERSE LENGTH=481
Length = 480
Score = 844 bits (2181), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/482 (81%), Positives = 442/482 (91%), Gaps = 2/482 (0%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPDVEVVVVDISAPRIEGWNSERLPIYEPGLDDVVRQ 60
MVKICCIGAGYVGGPTMAVIALKCPDVEV VVDIS PRI WNS+ LPIYEPGLDDVV+Q
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPDVEVAVVDISVPRINAWNSDTLPIYEPGLDDVVKQ 60
Query: 61 CRGRNLFFSTDVERHVADAGIVFVSVNTPTKTRGLGAGKAADLTYWESAARIIADVSRSD 120
CRG+NLFFSTDVE+HV +A IVFVSVNTPTKTRGLGAGKAADLTYWESAAR+IADVS SD
Sbjct: 61 CRGKNLFFSTDVEKHVREADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSVSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILAHNSKGGNIRYQILSNPEFLAEGTAIQDLFSPDRVLIGG 180
KIVVEKSTVPVKTAEAIEKIL HNSKG I++QILSNPEFLAEGTAI+DLF+PDRVLIGG
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKG--IKFQILSNPEFLAEGTAIKDLFNPDRVLIGG 178
Query: 181 RETPEGRAAVAALKSIYARWVPDDRIITTNLWSAELSKLAANAFLAQRISSVNAISALCE 240
RETPEG AV LK++YA WVP+ +IITTNLWSAELSKLAANAFLAQRISSVNA+SALCE
Sbjct: 179 RETPEGFKAVQTLKNVYAHWVPEGQIITTNLWSAELSKLAANAFLAQRISSVNAMSALCE 238
Query: 241 ATGADVTEVANSIGKDSRIGPRFLSASVGFGGSCFQKDILNLVYICECYGLPEVANYWHQ 300
ATGADVT+V+ ++G DSRIGP+FL++SVGFGGSCFQKDILNLVYICEC GLPEVA YW Q
Sbjct: 239 ATGADVTQVSYAVGTDSRIGPKFLNSSVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQ 298
Query: 301 VIRINDYQKSRFVNRVVSSMFNTVAGKKVAVLGFAFKKDTGDTRETPAIDVCKGLVGDKA 360
VI+INDYQKSRFVNRVVSSMFN+V+ KK+AVLGFAFKKDTGDTRETPAIDVCKGL+ DKA
Sbjct: 299 VIKINDYQKSRFVNRVVSSMFNSVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLEDKA 358
Query: 361 VVSIYDPQVTEEQVQRDLVMNKFDWDHPRHLQPMSPSSAKHVAVSWDAYEAARGAHAVCI 420
+SIYDPQVTE+Q+QRDL MNKFDWDHP HLQPMSP++ K V V+WDAYEA + AH +CI
Sbjct: 359 RLSIYDPQVTEDQIQRDLSMNKFDWDHPLHLQPMSPTTVKQVTVTWDAYEATKDAHGICI 418
Query: 421 LTEWDEFRRLDYQRMYDAMHKPAFLFDGRNVVDPDKLRRIGFVVYSIGKPLDHWLRDMPA 480
+TEWDEF+ LD+Q+++D M KPAF+FDGRN+++ KLR IGF+VYSIGKPLD WL+DMPA
Sbjct: 419 MTEWDEFKNLDFQKIFDNMQKPAFVFDGRNIMNLQKLREIGFIVYSIGKPLDDWLKDMPA 478
Query: 481 VA 482
VA
Sbjct: 479 VA 480
>AT5G39320.1 | chr5:15743254-15744696 FORWARD LENGTH=481
Length = 480
Score = 842 bits (2174), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/480 (81%), Positives = 440/480 (91%), Gaps = 2/480 (0%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPDVEVVVVDISAPRIEGWNSERLPIYEPGLDDVVRQ 60
MVKICCIGAGYVGGPTMAVIALKCPD+EV VVDIS PRI WNS++LPIYEPGLDD+V+Q
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVAVVDISVPRINAWNSDQLPIYEPGLDDIVKQ 60
Query: 61 CRGRNLFFSTDVERHVADAGIVFVSVNTPTKTRGLGAGKAADLTYWESAARIIADVSRSD 120
CRG+NLFFSTDVE+HV +A IVFVSVNTPTKT GLGAGKAADLTYWESAAR+IADVS SD
Sbjct: 61 CRGKNLFFSTDVEKHVREADIVFVSVNTPTKTTGLGAGKAADLTYWESAARMIADVSVSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILAHNSKGGNIRYQILSNPEFLAEGTAIQDLFSPDRVLIGG 180
KIVVEKSTVPVKTAEAIEKIL HNSKG I++QILSNPEFLAEGTAI DLF+PDRVLIGG
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILMHNSKG--IKFQILSNPEFLAEGTAIADLFNPDRVLIGG 178
Query: 181 RETPEGRAAVAALKSIYARWVPDDRIITTNLWSAELSKLAANAFLAQRISSVNAISALCE 240
RETPEG AV LK +YA WVP+ +IITTNLWSAELSKLAANAFLAQRISSVNA+SALCE
Sbjct: 179 RETPEGFKAVQTLKEVYANWVPEGQIITTNLWSAELSKLAANAFLAQRISSVNAMSALCE 238
Query: 241 ATGADVTEVANSIGKDSRIGPRFLSASVGFGGSCFQKDILNLVYICECYGLPEVANYWHQ 300
+TGADVT+V+ ++G DSRIG +FL+ASVGFGGSCFQKDILNLVYIC+C GLPEVA YW Q
Sbjct: 239 STGADVTQVSYAVGTDSRIGSKFLNASVGFGGSCFQKDILNLVYICQCNGLPEVAEYWKQ 298
Query: 301 VIRINDYQKSRFVNRVVSSMFNTVAGKKVAVLGFAFKKDTGDTRETPAIDVCKGLVGDKA 360
VI+INDYQK+RFVNR+VSSMFNTV+ KKVA+LGFAFKKDTGDTRETPAIDVCKGL+GDKA
Sbjct: 299 VIKINDYQKNRFVNRIVSSMFNTVSNKKVAILGFAFKKDTGDTRETPAIDVCKGLLGDKA 358
Query: 361 VVSIYDPQVTEEQVQRDLVMNKFDWDHPRHLQPMSPSSAKHVAVSWDAYEAARGAHAVCI 420
+SIYDPQVTEEQ+QRDL M KFDWDHP HLQPMSP++ K V+V+WDAYEA + AHAVC+
Sbjct: 359 QISIYDPQVTEEQIQRDLSMKKFDWDHPLHLQPMSPTTVKQVSVTWDAYEATKDAHAVCV 418
Query: 421 LTEWDEFRRLDYQRMYDAMHKPAFLFDGRNVVDPDKLRRIGFVVYSIGKPLDHWLRDMPA 480
LTEWDEF+ LDYQ+++D M KPAF+FDGRN+++ +KLR IGF+VYSIGKPLD WL+DMPA
Sbjct: 419 LTEWDEFKSLDYQKIFDNMQKPAFIFDGRNIMNVNKLREIGFIVYSIGKPLDPWLKDMPA 478
>AT1G26570.1 | chr1:9182801-9184246 FORWARD LENGTH=482
Length = 481
Score = 791 bits (2043), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/483 (76%), Positives = 430/483 (89%), Gaps = 3/483 (0%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPDVEVVVVDISAPRIEGWNSERLPIYEPGLDDVVRQ 60
MVKICCIGAGYVGGPTMAV+ALKCP++EVVVVDIS PRI WNS+RLPIYEPGL+DVV+Q
Sbjct: 1 MVKICCIGAGYVGGPTMAVMALKCPEIEVVVVDISEPRINAWNSDRLPIYEPGLEDVVKQ 60
Query: 61 CRGRNLFFSTDVERHVADAGIVFVSVNTPTKTRGLGAGKAADLTYWESAARIIADVSRSD 120
CRG+NLFFSTDVE+HV ++ IVFVSVNTPTKT+GLGAGKAADLTYWESAAR+IADVS+S
Sbjct: 61 CRGKNLFFSTDVEKHVFESDIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSS 120
Query: 121 KIVVEKSTVPVKTAEAIEKILAHNSKGGNIRYQILSNPEFLAEGTAIQDLFSPDRVLIGG 180
KIVVEKSTVPV+TAEAIEKIL HNSKG I +QILSNPEFLAEGTAI+DL++PDRVLIGG
Sbjct: 121 KIVVEKSTVPVRTAEAIEKILTHNSKG--IEFQILSNPEFLAEGTAIKDLYNPDRVLIGG 178
Query: 181 RETPEGRAAVAALKSIYARWVPDDRIITTNLWSAELSKLAANAFLAQRISSVNAISALCE 240
R+T G+ A+ AL+ +YA WVP ++II TNLWSAELSKLAANAFLAQRISSVNA+SALCE
Sbjct: 179 RDTAAGQKAIKALRDVYAHWVPVEQIICTNLWSAELSKLAANAFLAQRISSVNAMSALCE 238
Query: 241 ATGADVTEVANSIGKDSRIGPRFLSASVGFGGSCFQKDILNLVYICECYGLPEVANYWHQ 300
ATGADVT+VA+++G D+RIGP+FL+ASVGFGGSCFQKDILNL+YICEC GLPE ANYW Q
Sbjct: 239 ATGADVTQVAHAVGTDTRIGPKFLNASVGFGGSCFQKDILNLIYICECNGLPEAANYWKQ 298
Query: 301 VIRINDYQKSRFVNRVVSSMFNTVAGKKVAVLGFAFKKDTGDTRETPAIDVCKGLVGDKA 360
V+++NDYQK RF NRVVSSMFNTV+GKK+A+LGFAFKKDTGDTRETPAIDVC LV DKA
Sbjct: 299 VVKVNDYQKIRFANRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCNRLVADKA 358
Query: 361 VVSIYDPQVTEEQVQRDLVMNKFDWDHPRHLQPMSPSS-AKHVAVSWDAYEAARGAHAVC 419
+SIYDPQV EEQ++RDL M +FDWDHP LQ + ++ V V DAYEA + AH +C
Sbjct: 359 KLSIYDPQVLEEQIRRDLSMARFDWDHPVPLQQIKAEGISEQVNVVSDAYEATKDAHGLC 418
Query: 420 ILTEWDEFRRLDYQRMYDAMHKPAFLFDGRNVVDPDKLRRIGFVVYSIGKPLDHWLRDMP 479
+LTEWDEF+ LD+++++D M KPAF+FDGRNVVD KLR IGF+VYSIGKPLD WL+DMP
Sbjct: 419 VLTEWDEFKSLDFKKIFDNMQKPAFVFDGRNVVDAVKLREIGFIVYSIGKPLDSWLKDMP 478
Query: 480 AVA 482
AVA
Sbjct: 479 AVA 481
>AT3G01010.1 | chr3:4342-4818 FORWARD LENGTH=159
Length = 158
Score = 257 bits (656), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 115/163 (70%), Positives = 138/163 (84%), Gaps = 5/163 (3%)
Query: 320 MFNTVAGKKVAVLGFAFKKDTGDTRETPAIDVCKGLVGDKAVVSIYDPQVTEEQVQRDLV 379
MFNTV+ KK+ VL FAFKKDT RETPAIDVCKGL+GDKA +SIYDPQVTEEQ+QRDL
Sbjct: 1 MFNTVSNKKIVVLEFAFKKDT---RETPAIDVCKGLLGDKARISIYDPQVTEEQIQRDLT 57
Query: 380 MNKFDWDHPRHLQPMSPSSAKHVAVSWDAYEAARGAHAVCILTEWDEFRRLDYQRMYDAM 439
MN FDWDHP HLQPMSP++ K V+V+WDAY A + AH +C+LTEWDE++ LDY+R+++ M
Sbjct: 58 MNTFDWDHPLHLQPMSPTTVKQVSVAWDAYAATKDAHGICLLTEWDEYKTLDYERIFENM 117
Query: 440 HKPAFLFDGRNVVDPDKLRRIGFVVYSIGKPLDHWLRDMPAVA 482
KPAF+FDGRNV D +KLR+IGF+VYSIGKPLD W MPA+A
Sbjct: 118 QKPAFVFDGRNVFDAEKLRKIGFIVYSIGKPLDQW--HMPALA 158
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.136 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,433,513
Number of extensions: 431698
Number of successful extensions: 964
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 958
Number of HSP's successfully gapped: 5
Length of query: 482
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 380
Effective length of database: 8,310,137
Effective search space: 3157852060
Effective search space used: 3157852060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 114 (48.5 bits)