BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0599400 Os03g0599400|AK106733
(590 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G45500.1 | chr5:18432636-18434951 REVERSE LENGTH=772 177 1e-44
AT5G45520.1 | chr5:18449509-18453012 REVERSE LENGTH=1168 139 6e-33
AT3G50950.2 | chr3:18936127-18938685 FORWARD LENGTH=853 91 2e-18
>AT5G45500.1 | chr5:18432636-18434951 REVERSE LENGTH=772
Length = 771
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 138/522 (26%), Positives = 223/522 (42%), Gaps = 80/522 (15%)
Query: 136 LESLDPQLKQCALCLAVFPSGKAIKRRLLIHWWIGEGIVR----SAAAG----------- 180
E L Q K C L AVFP + + R +L++WW+GEGI+ S+ G
Sbjct: 256 FEELSDQRKICLLTFAVFPENQEVNRTMLMYWWMGEGILSTKDISSQEGTEEVILKPEDV 315
Query: 181 -KACFQDLLSRGLLQPAMLRPHCHTAHYCRVHPSVRDLLVAAARSFSYF-AFDRDGEPTD 238
K +D R L++P ++ + Y ++ P V +V ++ F +D +P
Sbjct: 316 VKVILKDFTDRNLIEPVEIKRKVEPSSY-KMAPFVHASVVLISKEIGLFDMYDIKDKPVM 374
Query: 239 ECLPGTTRRVTLCRTXXXXXXXXXXXEYV----TVYNLSQRYLEMDEAWLGEQR------ 288
+ G + + + E V TV+N+S+R+ + W E +
Sbjct: 375 KK-SGMHKVCLVEGSSSQQEAKAKKMEDVDHIETVFNVSERFPDFTFKWFSEDKPTRNKL 433
Query: 289 --------GMGTLQLGRWQTSPEHHVEMVRPDGVLGXXXXXXCRNLRYLSLRGISLVESL 340
+ LGRW+ + + H+E+ P+ + L+ LS +GIS +E L
Sbjct: 434 TLSKVTYQKLKVFYLGRWERTAKRHIEVENPELMKNLKRMI---KLKLLSFQGISRIERL 490
Query: 341 PESIGXXXXXXXXXXXACHNLETLPASMASLGKLEYLDASECYLLDQMPHGVCKLHRLQV 400
+++ AC+NLE LP + SL L YLD ++CY++D+MP + L L+V
Sbjct: 491 DDAVCKLRDLIILDLRACYNLEKLPDKIDSLKALIYLDITDCYMIDRMPKRLSWLDNLEV 550
Query: 401 LKGFVVASAAGGKKIXXXXXXXXXXXXXXXXXSVSTGRQLPVAPDDELPRLHGFAALESL 460
LKGFVV+ A + + S++ + DD + F LE L
Sbjct: 551 LKGFVVSDATDEETVCTLAELVHLKKLRKLSISINKEN---FSIDDVFVAVKSFKKLEKL 607
Query: 461 SVRW------------XXXXXXXXXXXRMDLSLLPR-------------------LAKLD 489
V W + ++ +L R L KLD
Sbjct: 608 KVAWGGINTHPQGKGVDSEKGDENVKPKENIGILERAATMFRKEKDPTAPELPKTLKKLD 667
Query: 490 LRRVPAEELQEVVHPARGGGLRKLCVRGG-RLRAFGDDVTWD----VVETLRVRFLERLD 544
L+ P E L E + P + KL ++GG +L FG + V LR++FL +L
Sbjct: 668 LQCFPGEHLPEWLEPDNLLNVEKLYIKGGIKLTGFGKSLPSQNSKCKVTVLRLKFLPKLK 727
Query: 545 CEWRQL-RSTFGKLRFVDKRRCPKLSSWRCDAQGIWRREEDD 585
EWR L + F +L+F++K +CP++S CD GIWR+ E+D
Sbjct: 728 VEWRDLSKRYFPELKFLEKYQCPQVSLCPCDGIGIWRKPEED 769
>AT5G45520.1 | chr5:18449509-18453012 REVERSE LENGTH=1168
Length = 1167
Score = 139 bits (349), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 134/274 (48%), Gaps = 14/274 (5%)
Query: 144 KQCALCLAVFPSGKAIKRRLLIHWWIGEGIVRSAAAGKACFQDLLS---RGLLQPAMLRP 200
K C L AVFP + +KR +L++WWIGEG + + + L S + LL+P
Sbjct: 232 KLCLLSFAVFPENREVKRTMLMYWWIGEGFISCDDSENLVTRILDSFSDKKLLEPVEDER 291
Query: 201 HCHTAHYCRVHPSVRDLLVAAARSFSYFA-FDRDGEPTDECLPGTTRRVTLCRTXX---- 255
+ Y ++ P V ++ A+ F ++++G+ + ++V L +
Sbjct: 292 KLLPSSY-KMEPHVHSAVIYLAKEMDLFELYNKNGKLI--MKKSSKKKVCLVKGSSLLRD 348
Query: 256 XXXXXXXXXEYVTVYNLSQRYLEMDEAWLGEQRGMGTLQLGRWQTSPEHHVEMVRPDGVL 315
TV+N S+RY + W + L LGRW+ + + H+E+ + +
Sbjct: 349 AKTSVMEPKTLQTVFNSSERYPDFTFKWFPLMDSLRVLYLGRWEQTAKRHIEVESTEFL- 407
Query: 316 GXXXXXXCRNLRYLSLRGISLVESLPESIGXXXXXXXXXXXACHNLETLPASMASLGKLE 375
+NLR S +GIS +E L SI AC+NLE LP+ + KL
Sbjct: 408 --KNMKSLKNLRLASFQGISRIERLENSICALPELVILDLKACYNLEVLPSDIGLFEKLI 465
Query: 376 YLDASECYLLDQMPHGVCKLHRLQVLKGFVVASA 409
YLD SECY+LD+MP G+ KL RLQVLKGFV++ +
Sbjct: 466 YLDVSECYMLDRMPKGIAKLSRLQVLKGFVISES 499
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 58/108 (53%), Gaps = 7/108 (6%)
Query: 478 DLSLLP-RLAKLDLRRVPAEELQEVVHPARGGGLRKLCVRGGRLRAFGDDV-----TWDV 531
D LP L KL+L P + ++P L+KL ++GG+L GD+ WDV
Sbjct: 1055 DTYTLPSNLKKLELECFPETKPPSWLNPKDLKNLKKLSIKGGKLSRIGDESRITEDKWDV 1114
Query: 532 VETLRVRFLERLDCEWRQLRSTFGKLRFVDKRRCPKLSSWRCDAQGIW 579
E LR+++L EWR L++ F K+ ++K +CPK++ D G+W
Sbjct: 1115 -EILRLKYLHEFKVEWRDLQTLFPKMTLLEKYKCPKIAFCPTDGNGVW 1161
>AT3G50950.2 | chr3:18936127-18938685 FORWARD LENGTH=853
Length = 852
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 108/470 (22%), Positives = 185/470 (39%), Gaps = 67/470 (14%)
Query: 137 ESLDPQLKQCALCLAVFPSGKAIKRRLLIHWWIGEGIV-----RSAA-AGKACFQDLLSR 190
+ L LK C L L+++P I ++ L+H WIGEG V RSA +G+ CF L +R
Sbjct: 409 DELPSHLKSCILTLSLYPEDCVIPKQQLVHGWIGEGFVMWRNGRSATESGEDCFSGLTNR 468
Query: 191 GLLQPAMLRPHCHTAHYCRVHPSVRDLLVAAARSFSYF--------------AFDRDGEP 236
L++ + + + T C++H VRDL++ A+ S+ FD
Sbjct: 469 CLIE-VVDKTYSGTIITCKIHDMVRDLVIDIAKKDSFSNPEGLNCRHLGISGNFDEKQIK 527
Query: 237 TDECLPG---TTRRVTLCRTXXXXXXXXXXXEYVTVYNLSQRYLEMDEAWLGEQRGMGTL 293
+ L G TT+ + + +Y+ V ++S+ + + + ++ + +L
Sbjct: 528 VNHKLRGVVSTTKTGEVNKLNSDLAKKFTDCKYLRVLDISKSIFDAPLSEILDE--IASL 585
Query: 294 QLGRWQTSPEHHVEMVRPDGVLGXXXXXXCRNLRYLSLRGISLVESLPESIGXXXXXXXX 353
Q +L LSL + P S+
Sbjct: 586 Q------------------------------HLACLSLSNTHPLIQFPRSMEDLHNLQIL 615
Query: 354 XXXACHNLETLPASMASLGKLEYLDASECYLLDQMPHGVCKLHRLQVLKGFVVASAAGGK 413
C NL+ L + KL LD + C L+ P G+ L +L+VL GF A + G
Sbjct: 616 DASYCQNLKQLQPCIVLFKKLLVLDMTNCGSLECFPKGIGSLVKLEVLLGFKPARSNNGC 675
Query: 414 KIXXXXXXXXXXXXXXXXXSVSTGRQLPVAPDDELPRLHGFAALESLSVRWXXXXXXXXX 473
K+ S++ G Q+ ++EL L + L S+S+
Sbjct: 676 KL---SEVKNLTNLRKLGLSLTRGDQI---EEEELDSLINLSKLMSISINCYDSYGDDLI 729
Query: 474 XXRMDLSLLPRLAKLDLRRVPAEELQEVVHPARGGGLRKLCVRGGRLRA-----FGDDVT 528
L+ +L +L L+ P + + P + LR + + G L +G++ T
Sbjct: 730 TKIDALTPPHQLHELSLQFYPGKSSPSWLSPHKLPMLRYMSICSGNLVKMQEPFWGNENT 789
Query: 529 WDVVETLRVRFLERLDCEWRQLRSTFGKLRFVDKRRCPKLSSWRCDAQGI 578
+E L + L LD +W L+ + LR V CP+L S+ + G
Sbjct: 790 HWRIEGLMLSSLSDLDMDWEVLQQSMPYLRTVTANWCPELESFAIEDVGF 839
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.137 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,748,309
Number of extensions: 381412
Number of successful extensions: 1743
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1760
Number of HSP's successfully gapped: 7
Length of query: 590
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 486
Effective length of database: 8,255,305
Effective search space: 4012078230
Effective search space used: 4012078230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 114 (48.5 bits)