BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0594700 Os03g0594700|AK101832
         (863 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G56870.1  | chr3:21053077-21055518 FORWARD LENGTH=701          110   3e-24

>AT3G56870.1 | chr3:21053077-21055518 FORWARD LENGTH=701
          Length = 700

 Score =  110 bits (276), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 117/233 (50%), Gaps = 28/233 (12%)

Query: 645 LLSKRKIMSPTSQEKLCSALTGID----LCGVQRLKRKILLEDCGKTRRPNG-----RSS 695
           LLS RK +SPTSQEKL  A+   D         R K     ++  +  +  G     R  
Sbjct: 451 LLSGRKALSPTSQEKLRKAMEHPDSPEKRSKKSRGKLYFSSQNSHRILKAQGLDNIDRVE 510

Query: 696 LSPTSK-GILKGTESPSPQKTTCTCMK-----------------AASVILDAEKAVEFSQ 737
           + P+SK  I K T +    K      K                   S+   ++KA+ FSQ
Sbjct: 511 IIPSSKQAIQKATNNTRQMKYQRATHKFPRRNTQAAKAQPFSTGGTSIQGCSQKAIAFSQ 570

Query: 738 RQMHDIENIASKLMRSLNHMRSIVDGNLLSESH-SLLPTFNTAEIRAASEDALEVERTTR 796
            QM D +N+A++L + L  MR I    L +ES+ S +   N  E++    +A + E + +
Sbjct: 571 GQMRDFQNVAARLTKELKSMRQITKRCLQAESNTSNMSDCNLDEVKTVIGNAEKTEESCK 630

Query: 797 KWLTIMNKDCNRFCKILRLAGKKAVSHSEVPRKRKKITFADETGGKLCHVKMF 849
           KWL+I+ +DCNRFCK++ +  + + +   +  K+KKI FAD+ GG LCHVK+F
Sbjct: 631 KWLSIIERDCNRFCKLMSMVREDSPATENIVHKKKKIRFADDAGGDLCHVKVF 683



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.312    0.128    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 19,051,803
Number of extensions: 846412
Number of successful extensions: 1994
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1992
Number of HSP's successfully gapped: 1
Length of query: 863
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 756
Effective length of database: 8,173,057
Effective search space: 6178831092
Effective search space used: 6178831092
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 116 (49.3 bits)