BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0588600 Os03g0588600|AK109508
(670 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G48385.1 | chr5:19609471-19611712 FORWARD LENGTH=559 70 5e-12
AT3G22440.1 | chr3:7959854-7961886 FORWARD LENGTH=533 66 6e-11
AT1G31814.1 | chr1:11412985-11414406 REVERSE LENGTH=474 61 2e-09
AT5G27230.1 | chr5:9584255-9587838 FORWARD LENGTH=949 55 9e-08
AT5G16320.1 | chr5:5344507-5345919 FORWARD LENGTH=471 54 3e-07
AT4G14900.1 | chr4:8521759-8523607 REVERSE LENGTH=533 51 2e-06
>AT5G48385.1 | chr5:19609471-19611712 FORWARD LENGTH=559
Length = 558
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 77/154 (50%), Gaps = 11/154 (7%)
Query: 331 SCVELLSCVPKL---------AVAPSPGTMEQANRLAEDWKEMIGRTESCSMNLGRLAVW 381
+C+ L+ C+ L AV S +A +AE W ++ + + N L
Sbjct: 248 TCIMLMECLSILLSGLDRNCLAVVLSQNVKHRAKTIAEGWNPLLESLDMDACNGNSLEAH 307
Query: 382 GLLNFLVSYNIVLEFDAEEIIHFFGTLPDDKKQCCISLCKYLGLIDKMADSVGHLIEHGQ 441
L L ++ IV +F +E++ + +++ LC+ LGL +KM + L+ G+
Sbjct: 308 AFLQLLATFAIVADFKEDELLKLIPMV--SRRRQAAELCRSLGLAEKMPGVIEVLVNSGK 365
Query: 442 QLVAIRLACTLNLTDKYTPLSIMEDYIQNAKETA 475
Q+ A+ LA LT++++P+S+++ Y+ A+ ++
Sbjct: 366 QIDAVNLAFAFELTEQFSPVSLLKSYLIEARRSS 399
>AT3G22440.1 | chr3:7959854-7961886 FORWARD LENGTH=533
Length = 532
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 105/225 (46%), Gaps = 23/225 (10%)
Query: 326 DSAWESCVELLSCVPKLAVAP---------SPGTMEQANRLAEDWKEMI---GRTESCSM 373
D W +CV +L + + V P +P E+A +AE WK+ + GR E
Sbjct: 195 DYGW-ACVVILESLTPVIVDPVIGKSRLLVTPSVKEKAKEIAETWKKSLEERGRIE---- 249
Query: 374 NLGRLAVWGLLNFLVSYNIVLEFDAEEIIHFFGTLPDDK-KQCCISLCKYLGLIDKMADS 432
N+ V L LV++ IV +E++ + + ++ L +GL D+M D
Sbjct: 250 NVKTPDVHTFLQHLVTFGIV---KSEDLALYRKLVVGSAWRKQMPKLAVSVGLGDQMPDM 306
Query: 433 VGHLIEHGQQLVAIRLACTLNLTDKYTPLSIMEDYIQNAKETAQEILSMESDS-ESLKLS 491
+ LI GQQL A+ + L DK+ P+ +++ Y+++AK++A I+ S++ + L
Sbjct: 307 IEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAYLRDAKKSAASIMEDSSNTGRATHLV 366
Query: 492 MSKQVNALILSWRVVGECNI-DSVHCDRIKAEITQLLHKYANKRH 535
K+ +AL + + E + + + +K + QL KR
Sbjct: 367 ARKEQSALKAVLKCIEEYKLEEEFPPENLKKRLDQLEKTKTEKRK 411
>AT1G31814.1 | chr1:11412985-11414406 REVERSE LENGTH=474
Length = 473
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 100/206 (48%), Gaps = 18/206 (8%)
Query: 352 EQANRLAEDWKEMIGRTESCSMNLGRLAVWGLLNFLVSYNIVLEFDAEEIIHFFGTLPDD 411
E+A +A DWK IG S ++ G L+ + ++ + F EEI + +
Sbjct: 182 ERARTIAYDWKPNIGNKPSEAL--------GFLHLVAAFELGSLFSTEEICDYIFLISKY 233
Query: 412 KKQCCISLCKYLGL-IDKMADSVGHLIEHGQQLVAIRLACTLNLTDKYTPLSIMEDYIQN 470
K+ I CK +GL +++ V ++ G+ LVAIR + ++ P+SI++ ++N
Sbjct: 234 KQATTI--CKKIGLDRNRIGVLVQKFLDTGRLLVAIRFIYENEMVGEFEPVSILKTSLKN 291
Query: 471 AKETAQEILSMESDSESLKL---SMSKQVNALILSWRVVGECNIDSVHCDRIKAEITQLL 527
++E A+ + + + SLK+ + K+++AL +VV E NI+S + E + L
Sbjct: 292 SREAAKRVCA--EGNYSLKVQNEATDKELSALRAVIKVVKEKNIESEFMEEKLEECVKEL 349
Query: 528 --HKYANKRHSLEELPSDTSSPHQKH 551
K KR + P++ P ++
Sbjct: 350 EDQKAQRKRATKFNSPANPQQPQEQK 375
>AT5G27230.1 | chr5:9584255-9587838 FORWARD LENGTH=949
Length = 948
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 90/173 (52%), Gaps = 19/173 (10%)
Query: 354 ANRLAEDWKEMIGRTESCSMNLGRLAVWGLLNFLVSYNIVLEFDAEEIIHFFGTLPDDKK 413
A +LA WK+ I +++ +L V L FL + IV EF A++++ G L +
Sbjct: 631 AKKLAVYWKDKIAKSKR-----DQLEVICFLQFLGIFGIVSEFKADDLL---GLLDNSYW 682
Query: 414 QCCI-SLCKYLGLIDKMADSVGHLIEHGQQLVAIRLACTLNLTDKYTPLS-IMEDYIQNA 471
Q LC++LGL D + + +LI+ G ++ AI + + ++ P+S I+ D ++
Sbjct: 683 QTVSPDLCQFLGLDDAIPGFIQNLIKTGHRIKAIDYIYSFGMVHRFQPVSAIINDSLRIT 742
Query: 472 KETAQE-ILSMESDSESLKLSMSKQVNALILSWRVVGECNIDSVHCDRIKAEI 523
KE+A++ +++S + ++ +QV AL R +C + C ++++E
Sbjct: 743 KESAEKSYREAKNESTTQVAAIDRQVRAL----RAAIKC----ISCHKLESEF 787
>AT5G16320.1 | chr5:5344507-5345919 FORWARD LENGTH=471
Length = 470
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 99/208 (47%), Gaps = 23/208 (11%)
Query: 350 TMEQANRLAEDWKEMIGRTESCSMNLGRLAVWGLLNFLVSYNIVLEFDAEEIIHFFGTLP 409
T +A +LA WK +G + L+ + ++ + EFD EE+ + +
Sbjct: 187 TRNRAKKLAYHWKSKVG--------VKPFEALVFLHLVAAFELGSEFDTEELSDYVFMIA 238
Query: 410 DDKKQCCISLCKYLGLIDK-MADSVGHLIEHGQQLVAIRLACTLNLTDKYTPLSIMEDYI 468
K+ + C +G+ K + + L++ G+ ++A++ +TD++ P+ +++ YI
Sbjct: 239 KYKQATLV--CNKIGVDRKRVGKLIKTLLDSGKPILAVKFMYECGMTDEFEPIPVLKSYI 296
Query: 469 QNAKETAQEI-----LSMESDSESLKLSMSKQVNALILSWRVVGECNIDSVHC-DRIKAE 522
++ +E A + S++S +E + K+V+AL +++ + N++S ++++
Sbjct: 297 KDCREAALRVCVEDNYSLKSQNE----ASDKEVSALKPLIKIIKDQNLESEFTQEKVEER 352
Query: 523 ITQLLHKYANKRHSLEELPSDTSSPHQK 550
+ +L A ++ + P P QK
Sbjct: 353 VEELEKNKALRKRNTTNPPK--QEPQQK 378
>AT4G14900.1 | chr4:8521759-8523607 REVERSE LENGTH=533
Length = 532
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 93/219 (42%), Gaps = 13/219 (5%)
Query: 326 DSAWESCVELLSCVP--------KLAVAPSPGTMEQANRLAEDWKEMIGRTESCSMNLGR 377
D W V L S +P K + +P E+A +AE WK + N+
Sbjct: 193 DFGWACVVILESLIPVMVDPVMGKSRLLVTPSVKEKAKEIAETWKASLEERGGIE-NVKT 251
Query: 378 LAVWGLLNFLVSYNIVLEFDAEEIIHFFGTLPDDKKQCCISLCKYLGLIDKMADSVGHLI 437
V L LV++ IV + D ++ + ++ L +GL D+M D + LI
Sbjct: 252 PDVHTFLQHLVTFGIVKKDDL--ALYRKLVVGSAWRKQMPKLAVSVGLGDQMPDMIEELI 309
Query: 438 EHGQQLVAIRLACTLNLTDKYTPLSIMEDYIQNAKETAQEILSMESDS-ESLKLSMSKQV 496
GQQL A+ + L + P+ +++ Y+++AK+ I ++S S L K+
Sbjct: 310 IRGQQLDAVHFTFEVGLVHLFPPVPLLKAYLRDAKKATALITDDSNNSGRSAHLVARKEQ 369
Query: 497 NALILSWRVVGECNI-DSVHCDRIKAEITQLLHKYANKR 534
+AL + + E + + + +K + QL KR
Sbjct: 370 SALRAVLKCIEEYKLEEEFPPENLKKRLDQLEKTKTEKR 408
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.132 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,854,761
Number of extensions: 350070
Number of successful extensions: 1140
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1138
Number of HSP's successfully gapped: 7
Length of query: 670
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 565
Effective length of database: 8,227,889
Effective search space: 4648757285
Effective search space used: 4648757285
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 115 (48.9 bits)