BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0586500 Os03g0586500|AK068097
         (271 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G15840.1  | chr3:5356782-5358418 REVERSE LENGTH=269            306   6e-84

>AT3G15840.1 | chr3:5356782-5358418 REVERSE LENGTH=269
          Length = 268

 Score =  306 bits (785), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 141/211 (66%), Positives = 172/211 (81%), Gaps = 2/211 (0%)

Query: 63  QTNECSLPTWAEFELGKAPVYWKTMNGLPPSAGEGLILFYNPAATKMTPNAQFGIAFNGG 122
           +  E  LP+WA FE+G APVYWKTMNGLPP++GE L LFYNPAA+K+T N  +G+AFNGG
Sbjct: 58  EIKEYKLPSWAMFEMGTAPVYWKTMNGLPPTSGEKLKLFYNPAASKLTLNEDYGVAFNGG 117

Query: 123 FNQPIMCGGEPRQMTLQERGSADPPIYTIRIRVPQHAMTLVFSFTNGVDWDGPYTLKFRV 182
           FNQPIMCGGEPR M  ++RG AD PIYT++I +P+HA+ L+FSFTNGVDWDGPY L+F+V
Sbjct: 118 FNQPIMCGGEPRAMLKKDRGKADSPIYTMQICIPKHAVNLIFSFTNGVDWDGPYRLQFQV 177

Query: 183 PKPWLNKPLSFFNEGLADELNREGACDRAIFPDENVVITSCEM-GSYYEEGGDRCKLDIV 241
           PK W NKP+ FFNEGLA+EL+++GAC+RAIFPD NVV T C M  +   EGGDRC LD+V
Sbjct: 178 PKRWQNKPIEFFNEGLANELSQDGACERAIFPDSNVVPTRCTMIANLTVEGGDRCNLDLV 237

Query: 242 SGCMDPNSHMFDPLATVDDGSCPMD-SDSEE 271
            GCMD NS  F+P A VDDGSCP++ SDS+E
Sbjct: 238 PGCMDTNSEHFNPYANVDDGSCPLELSDSDE 268



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.136    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,081,614
Number of extensions: 253554
Number of successful extensions: 421
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 420
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 174
Effective length of database: 8,447,217
Effective search space: 1469815758
Effective search space used: 1469815758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)