BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0577200 Os03g0577200|AK061735
(214 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G45550.1 | chr5:18462284-18464840 FORWARD LENGTH=216 421 e-118
AT4G19045.1 | chr4:10438213-10439788 REVERSE LENGTH=216 416 e-117
AT5G20440.1 | chr5:6908646-6909996 FORWARD LENGTH=217 262 1e-70
AT5G20430.1 | chr5:6904705-6905391 FORWARD LENGTH=123 171 3e-43
>AT5G45550.1 | chr5:18462284-18464840 FORWARD LENGTH=216
Length = 215
Score = 421 bits (1083), Expect = e-118, Method: Compositional matrix adjust.
Identities = 202/215 (93%), Positives = 208/215 (96%), Gaps = 1/215 (0%)
Query: 1 MSLFGLGRNQKTFRPKKSAPSGSKGAQLRKHIDATLGSGNLREAVRLPPGEDINEWLAVN 60
MSLFGLGRNQKTFRPKKSAPSGSKGAQLRKHIDATLGSGNLREAVRLPPGED NEWLAVN
Sbjct: 1 MSLFGLGRNQKTFRPKKSAPSGSKGAQLRKHIDATLGSGNLREAVRLPPGEDANEWLAVN 60
Query: 61 TVDFFNQVNLLYGTLAEFCTPESCPTMTAGPKYEYRWADGVQIKKPIEVSAPKYVEYLMD 120
TVDFFNQVNLLYGTL EFCTP++CPTMTAGPKYEYRWADGVQIKKPIEVSAPKYVEYLMD
Sbjct: 61 TVDFFNQVNLLYGTLTEFCTPDNCPTMTAGPKYEYRWADGVQIKKPIEVSAPKYVEYLMD 120
Query: 121 WIEGQLDDESIFPQKLGTPFPPNFKEVVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLN 180
WIE QLDDE++FPQ+LG PFP NFK+VVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLN
Sbjct: 121 WIETQLDDETLFPQRLGAPFPQNFKDVVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLN 180
Query: 181 TCFKHFILFTTEFGLIDKKELAPLQELIESII-PY 214
TCFKHFILFT EFGLIDKKELAPLQELIESII PY
Sbjct: 181 TCFKHFILFTHEFGLIDKKELAPLQELIESIISPY 215
>AT4G19045.1 | chr4:10438213-10439788 REVERSE LENGTH=216
Length = 215
Score = 416 bits (1069), Expect = e-117, Method: Compositional matrix adjust.
Identities = 200/215 (93%), Positives = 207/215 (96%), Gaps = 1/215 (0%)
Query: 1 MSLFGLGRNQKTFRPKKSAPSGSKGAQLRKHIDATLGSGNLREAVRLPPGEDINEWLAVN 60
MSLFGLGRNQKTFRPKKSAPSG+KGA+LRKHIDATLGSGNLREAV+LPPGED+NEWLAVN
Sbjct: 1 MSLFGLGRNQKTFRPKKSAPSGTKGAELRKHIDATLGSGNLREAVKLPPGEDLNEWLAVN 60
Query: 61 TVDFFNQVNLLYGTLAEFCTPESCPTMTAGPKYEYRWADGVQIKKPIEVSAPKYVEYLMD 120
TVDFFNQVNLL+GTL EFCTPE+C TMTAGPKYEYRWADGVQIKKPIEVSAPKYVEYLMD
Sbjct: 61 TVDFFNQVNLLFGTLTEFCTPENCSTMTAGPKYEYRWADGVQIKKPIEVSAPKYVEYLMD 120
Query: 121 WIEGQLDDESIFPQKLGTPFPPNFKEVVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLN 180
WIE QLDDE+IFPQKLG FPPNFKEVVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLN
Sbjct: 121 WIETQLDDETIFPQKLGAAFPPNFKEVVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLN 180
Query: 181 TCFKHFILFTTEFGLIDKKELAPLQELIESII-PY 214
TCFKHFILFT EF LIDKKELAPLQELIESII PY
Sbjct: 181 TCFKHFILFTHEFVLIDKKELAPLQELIESIIAPY 215
>AT5G20440.1 | chr5:6908646-6909996 FORWARD LENGTH=217
Length = 216
Score = 262 bits (669), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 121/199 (60%), Positives = 156/199 (78%), Gaps = 3/199 (1%)
Query: 15 PKKSAPSGSKGAQLRKHIDATLGSGNLREAVRLPPGEDINEWLAVNTVDFFNQVNLLYGT 74
P K +++R+ I + S NLREAVRLP G DINEW A+NTVDFFNQ++LLY T
Sbjct: 18 PSKKRKHPEYKSKIRELISG-IRSDNLREAVRLPQGVDINEWFAMNTVDFFNQISLLYAT 76
Query: 75 LAEFCTPESCPTMTAGPKYEYRWADGVQIKKPIEVSAPKYVEYLMDWIEGQLDDESIFPQ 134
L EFCT +CP M AG +YEYRWADG I KP VSAPKYVEYL+DW+E ++D+E+IFP+
Sbjct: 77 LEEFCTQTTCPVMNAG-RYEYRWADGTTITKPKTVSAPKYVEYLIDWVETEIDNEAIFPK 135
Query: 135 KLGTPFPPNFKEVVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHFILFTTEFG 194
G PFPPNF++ VK I ++LFRVYAHIY+SHF +IV+L E+AHLNTCFKHF+LF +EF
Sbjct: 136 NPGEPFPPNFEDFVKRILRKLFRVYAHIYYSHFHEIVALNEQAHLNTCFKHFLLFVSEFQ 195
Query: 195 LIDK-KELAPLQELIESII 212
L+DK KE+AP++ L+E+++
Sbjct: 196 LVDKEKEMAPIKSLVETML 214
>AT5G20430.1 | chr5:6904705-6905391 FORWARD LENGTH=123
Length = 122
Score = 171 bits (432), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 78/126 (61%), Positives = 102/126 (80%), Gaps = 6/126 (4%)
Query: 87 MTAGPKYEYRWADGVQIKKPIEVSAPKYVEYLMDWIEGQLDDESIFPQKLGTPFPPNFKE 146
M AG +YEYRWADG + VSAP+YVE LM+WIE Q+D+E IFP+K G PFPPNF++
Sbjct: 1 MKAG-RYEYRWADGTTM-----VSAPEYVELLMNWIETQIDNEHIFPKKTGEPFPPNFED 54
Query: 147 VVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHFILFTTEFGLIDKKELAPLQE 206
VK I ++LFRVYAHIYHSHF KIV+L E+AHLNTCF ++LF +EF L+DK+E+ P+Q+
Sbjct: 55 FVKRILRKLFRVYAHIYHSHFPKIVTLNEQAHLNTCFHRYLLFVSEFQLVDKEEMVPIQK 114
Query: 207 LIESII 212
L+E+I+
Sbjct: 115 LVETIL 120
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.139 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,015,903
Number of extensions: 213458
Number of successful extensions: 411
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 408
Number of HSP's successfully gapped: 4
Length of query: 214
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 120
Effective length of database: 8,529,465
Effective search space: 1023535800
Effective search space used: 1023535800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)