BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0568600 Os03g0568600|AK102228
         (500 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G54880.1  | chr5:22291920-22293104 FORWARD LENGTH=395          176   3e-44

>AT5G54880.1 | chr5:22291920-22293104 FORWARD LENGTH=395
          Length = 394

 Score =  176 bits (446), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 85/161 (52%), Positives = 115/161 (71%), Gaps = 15/161 (9%)

Query: 339 GPLGQSAVSNGFTVTKIQMKKSKQTGEVSVFEEFSITIPPKSALLFPCQRAISI----DA 394
            P     ++ GF VTK    K          +EF + +PP SALLFP + ++ I    + 
Sbjct: 242 SPAAMDVLAKGFMVTKFSEGK----------QEFELEVPPGSALLFPSEESVKINYLKEK 291

Query: 395 SDCQLQHLIVLDGTWAKAQRMYHENPWLQLLP-HVKLESDGVSLYSEVRHEPRAGCLSTI 453
            + ++++LIVLDGTW+KA+R+Y ENPWL+LL  HVKLE +G SLY EVR +PRAGCLSTI
Sbjct: 292 EELKVRNLIVLDGTWSKARRIYLENPWLKLLRCHVKLEIEGTSLYKEVRRQPRAGCLSTI 351

Query: 454 ESIVVAMRKLGEDAKGLDDLLDVFESMIADQRRCKDENWKQ 494
           ESIV AM+++GED +GLD++L+VFESM+ DQRRCKDEN+ +
Sbjct: 352 ESIVYAMKEIGEDPEGLDNMLNVFESMVEDQRRCKDENFNK 392




 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 43/87 (49%)

Query: 16  RRPMCGVCTKXXXXXXXXXXXXXXXDTAVGVTVLQHLMEAGHPLNSTRVARLGLRNLAVA 75
           +RP C  C K               D  V +T+LQH +E  H LNSTR+ARLGL+N+ V 
Sbjct: 44  KRPTCPSCDKPSQLCLCKKMRSPCFDNQVSITILQHSLERKHALNSTRIARLGLKNVGVT 103

Query: 76  LVGDVNHRASFHLRTLDXXXXXXXXNH 102
            V DV+  A F +R +         NH
Sbjct: 104 TVFDVHDEAEFLIRVIGSGCSKIDTNH 130



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.133    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,214,863
Number of extensions: 410853
Number of successful extensions: 962
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 960
Number of HSP's successfully gapped: 2
Length of query: 500
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 397
Effective length of database: 8,282,721
Effective search space: 3288240237
Effective search space used: 3288240237
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 114 (48.5 bits)