BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0437600 Os03g0437600|AK073355
(271 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G37470.1 | chr4:17617045-17618363 REVERSE LENGTH=271 447 e-126
AT3G03990.1 | chr3:1033788-1034591 FORWARD LENGTH=268 312 1e-85
AT3G24420.1 | chr3:8863111-8864883 REVERSE LENGTH=274 227 4e-60
AT5G19850.1 | chr5:6709976-6711662 REVERSE LENGTH=360 61 7e-10
>AT4G37470.1 | chr4:17617045-17618363 REVERSE LENGTH=271
Length = 270
Score = 447 bits (1149), Expect = e-126, Method: Compositional matrix adjust.
Identities = 207/271 (76%), Positives = 247/271 (91%), Gaps = 1/271 (0%)
Query: 1 MGIVEEAHNLRVVGEGKRGVIVLAHGFGTDQSVWKHLVPHLVADYRVVLFDTMGAGPTNP 60
MG+VEEAHN++V+G G+ IVL HGFGTDQSVWKHLVPHLV DYRVVL+D MGAG TNP
Sbjct: 1 MGVVEEAHNVKVIGSGE-ATIVLGHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNP 59
Query: 61 DYFDFSRYATLEGYALDLLAILQELRVASCIYVGHSVSAVIGAIASISRPDLFSKLVLLS 120
DYFDF RY+ LEGY+ DL+AIL++L++ SCI+VGHSVSA+IG +AS++RPDLFSK+V++S
Sbjct: 60 DYFDFDRYSNLEGYSFDLIAILEDLKIESCIFVGHSVSAMIGVLASLNRPDLFSKIVMIS 119
Query: 121 ASPRYLNDVDYYGGFEQEDLDELFEAMGSNYKAWCSGFAPLCVGGDMESVAVQEFSRTLF 180
ASPRY+NDVDY GGFEQEDL++LFEA+ SNYKAWC GFAPL VGGDM+S+AVQEFSRTLF
Sbjct: 120 ASPRYVNDVDYQGGFEQEDLNQLFEAIRSNYKAWCLGFAPLAVGGDMDSIAVQEFSRTLF 179
Query: 181 NIRPDIALSVAQTIFQSDVRSLLPLVTVPCHIVQSTKDLAVPVVVSEYLHKHLGGDSIVE 240
N+RPDIALSV QTIFQSD+R +LP VTVPCHI+QS KDLAVPVVVSEYLH +LG +S+VE
Sbjct: 180 NMRPDIALSVGQTIFQSDMRQILPFVTVPCHILQSVKDLAVPVVVSEYLHANLGCESVVE 239
Query: 241 VMPSEGHLPQLSSPDIVIPVLLRHIQHDIAV 271
V+PS+GHLPQLSSPD VIPV+LRHI++DIA+
Sbjct: 240 VIPSDGHLPQLSSPDSVIPVILRHIRNDIAM 270
>AT3G03990.1 | chr3:1033788-1034591 FORWARD LENGTH=268
Length = 267
Score = 312 bits (799), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 149/258 (57%), Positives = 198/258 (76%), Gaps = 2/258 (0%)
Query: 6 EAHNLRVVGEGKRGVIVLAHGFGTDQSVWKHLVPHLVADYRVVLFDTMGAGPTNPDYFDF 65
EA N+RVVG G R ++ LAHGFGTDQS W ++P+ +YRVVL+D + AG NPDYFDF
Sbjct: 8 EALNVRVVGTGDR-ILFLAHGFGTDQSAWHLILPYFTQNYRVVLYDLVCAGSVNPDYFDF 66
Query: 66 SRYATLEGYALDLLAILQELRVASCIYVGHSVSAVIGAIASISRPDLFSKLVLLSASPRY 125
+RY TL+ Y DLL I+ L + +C YVGHSVSA+IG IASI RP+LFSKL+L+ SPR+
Sbjct: 67 NRYTTLDPYVDDLLNIVDSLGIQNCAYVGHSVSAMIGIIASIRRPELFSKLILIGFSPRF 126
Query: 126 LNDVDYYGGFEQEDLDELFEAMGSNYKAWCSGFAPLCVGGDMESVAVQEFSRTLFNIRPD 185
LND DY+GGFE+ +++++F AM +NY+AW GFAPL VG D+ + AV+EFSRTLFN+RPD
Sbjct: 127 LNDEDYHGGFEEGEIEKVFSAMEANYEAWVHGFAPLAVGADVPA-AVREFSRTLFNMRPD 185
Query: 186 IALSVAQTIFQSDVRSLLPLVTVPCHIVQSTKDLAVPVVVSEYLHKHLGGDSIVEVMPSE 245
I+L V++T+F SD+R +L LV VP ++Q+ KD++VP V+EYL HLGGD+ VE + +E
Sbjct: 186 ISLFVSRTVFNSDLRGVLGLVRVPTCVIQTAKDVSVPASVAEYLRSHLGGDTTVETLKTE 245
Query: 246 GHLPQLSSPDIVIPVLLR 263
GHLPQLS+P + L R
Sbjct: 246 GHLPQLSAPAQLAQFLRR 263
>AT3G24420.1 | chr3:8863111-8864883 REVERSE LENGTH=274
Length = 273
Score = 227 bits (579), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 108/262 (41%), Positives = 179/262 (68%), Gaps = 4/262 (1%)
Query: 7 AHNLRVVGEGKRGVIVLAHGFGTDQSVWKHLVPHLVADYRVVLFDTMGAGP-TNPDYFDF 65
A N +++G G+R +VLAHGFG DQSVW ++P L ++V++FD + +G + +D
Sbjct: 13 AMNAKIIGSGERS-MVLAHGFGGDQSVWDKIIPVLSQSFKVLVFDWLFSGAIKDQTLYDP 71
Query: 66 SRYATLEGYALDLLAILQELRVASCIYVGHSVSAVIGAIASISRPDLFSKLVLLSASPRY 125
S+Y +L+ ++ DL+A+++EL+ ++VGHS+S VIG ASI RPDLF+ L+L++ASPRY
Sbjct: 72 SKYNSLDVFSDDLIALMEELKFGPVVFVGHSMSGVIGCAASIKRPDLFTNLLLIAASPRY 131
Query: 126 LNDVDYYGGFEQEDLDELFEAMGSNYKAWCSGFAPLCVGGDMESVAVQEFSRTLFNIRPD 185
+N DY GGFE +D+D + ++GSNY+AW F+ V +S++VQ F ++L ++P+
Sbjct: 132 INSEDYKGGFESKDIDTIITSIGSNYEAWAVDFSSFVVDS-RDSLSVQRFEKSLKKMKPE 190
Query: 186 IALSVAQTIFQSDVRSLLPLVTVPCHIVQSTKDLAVPVVVSEYLHKHLGGDSIVEVMPSE 245
AL++A+ +F SD R +L V+VPCH++Q D+ VPV V+ ++ + + G S VE++
Sbjct: 191 TALALAKIVFGSDEREILGQVSVPCHVIQPGNDVVVPVSVAYFMQEKIKGKSTVEIIEDA 250
Query: 246 -GHLPQLSSPDIVIPVLLRHIQ 266
GH PQ++S ++ V+ R ++
Sbjct: 251 IGHFPQMTSHLELLGVMRRLLE 272
>AT5G19850.1 | chr5:6709976-6711662 REVERSE LENGTH=360
Length = 359
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 111/275 (40%), Gaps = 22/275 (8%)
Query: 6 EAHNLRVVGEGKRG-VIVLAHGFGTDQSVWKHLVPHLVADYRVVLFDTMGAG---PTNPD 61
+ +++R G G +VL HGFG + W+ P L +RV D +G G NP
Sbjct: 81 KGYSIRYQCAGTSGPALVLVHGFGANSDHWRKNTPILGKTHRVYSIDLIGYGYSDKPNPR 140
Query: 62 YFDFSRYATLEGYALDLLAILQELRVASCIYVGHSVSAVIGAIASISRPDLFSKLVLLSA 121
F + T E + L ++ ++ +S+ ++G A++S+P++ L+L++
Sbjct: 141 EFGGEPFYTFETWGEQLNDFCLDVVKDEAFFICNSIGGLVGLQAAVSKPEICRGLMLINI 200
Query: 122 SPRYLNDVDYYGGFEQEDLDELFEAMGSNYKAWCSGFAPLCVGGDMESVAVQ------EF 175
S R L+ F + F+ + N F + ++S+ Q +
Sbjct: 201 SLRMLHIKKQ--PFIGRPFIKSFQNLLRNTPVGKLFFKSIAKPETVKSILCQCYHDSSQV 258
Query: 176 SRTLFN--IRPDIALSVAQTIFQSDVRS-------LLPLVTVPCHIVQSTKDLAVPVVVS 226
+ L +RP + + S LLPLV P I KD P+ +
Sbjct: 259 TDELVEAILRPGLEPGAVDVFLEFICYSGGPLPEDLLPLVKCPVLIAWGEKDPWEPIELG 318
Query: 227 EYLHKHLGGDSIVEVMPSEGHLPQLSSPDIVIPVL 261
+ V V+P GH PQ P++V P++
Sbjct: 319 RAYSNFDAVEDFV-VLPDAGHCPQDEKPEMVNPLI 352
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.139 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,938,858
Number of extensions: 246172
Number of successful extensions: 605
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 609
Number of HSP's successfully gapped: 5
Length of query: 271
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 174
Effective length of database: 8,447,217
Effective search space: 1469815758
Effective search space used: 1469815758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)