BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0432900 Os03g0432900|J080002G09
(253 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G10490.1 | chr5:3300376-3304005 REVERSE LENGTH=674 96 2e-20
AT1G58200.1 | chr1:21548370-21552488 REVERSE LENGTH=679 74 8e-14
>AT5G10490.1 | chr5:3300376-3304005 REVERSE LENGTH=674
Length = 673
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 106/205 (51%), Gaps = 17/205 (8%)
Query: 19 QEAVMLDLLRIVGHHRARLATQIRTVQKSYGNADIDNIPFGEEMYSRVRG-RPL-LIDTS 76
+EA++LDLLR++ HHRARLAT IRT++K Y D++N PFGE MY V RPL LI+ +
Sbjct: 431 KEAILLDLLRVISHHRARLATPIRTIRKMYTETDVENTPFGESMYGGVTSRRPLMLIEPA 490
Query: 77 ARIS-DDKSK-----PRPASREDHKVKTVTSAEXXXXXXXXXXXXXXEKQEQKKSVPEDG 130
+I+ +DKSK +P + +++K S E VPE+
Sbjct: 491 YKINGEDKSKSQNRAAKPTAEQENKGSNPKSKETSSPDLKANVKVGESPVSDTNKVPEE- 549
Query: 131 RMKNSKNDHATTTSPSSPWSENMDPIASTSKTGKGKTQGAEATEREGDGAVSVANSKKES 190
+K + P +P D S ++ K K G + D S +S S
Sbjct: 550 --TVAKPVIKAVSKPPTP----KDTETSGTEKPKAKRSGGTIKSTKTDETDSSTSSASRS 603
Query: 191 RPVFEDNIVLGLALEGSKRTLPIDD 215
E+NIVLG+ALEGSKRTLPI++
Sbjct: 604 T--LEENIVLGVALEGSKRTLPIEE 626
>AT1G58200.1 | chr1:21548370-21552488 REVERSE LENGTH=679
Length = 678
Score = 73.9 bits (180), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 113/238 (47%), Gaps = 52/238 (21%)
Query: 19 QEAVMLDLLRIVGHHRARLATQIRTVQKSYGNADIDNIPFGEEMYSR--VRGRPLLIDTS 76
+EAV+LDLL ++ HH ARLAT IRTVQ+ A++D F + ++++ + R +LI+ S
Sbjct: 433 KEAVLLDLLTVIRHHGARLATPIRTVQRMRNEAEVDTAGFSDIVFNQAAMNRRYMLIEPS 492
Query: 77 ARI-SDDKSK-PRPA-------------SREDHKVKTVTSAEXXXXXXXXXXXXXXEKQE 121
+I SDD SK P P+ R+ + + T AE +K+
Sbjct: 493 YKINSDDNSKSPSPSPGQKSPSPGQKSEERDLQEEPSETKAE--TENNGSVPVSNAKKEN 550
Query: 122 QKKSVPEDGRMKNSKNDHATTTSPSSPWSENM------DP------------------IA 157
QK ++ + + +T+ P + SE DP +
Sbjct: 551 QKAALGSNSNTGTKGSSTSTSDQPVAQKSEEKKKESVGDPHKAEKDEVSDDEATIEQTLK 610
Query: 158 STSKTGKGKTQGAEATEREGDGAVSVANSKKESRPVFEDNIVLGLALEGSKRTLPIDD 215
S +K G K G E+ R+G G+ + + E+N+VLG+AL+GSKRTLPID+
Sbjct: 611 SKAKQGSEKNNG-ESKARDGGGS--------GTSSLLEENLVLGVALDGSKRTLPIDE 659
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.308 0.125 0.344
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,145,456
Number of extensions: 203023
Number of successful extensions: 653
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 650
Number of HSP's successfully gapped: 2
Length of query: 253
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 157
Effective length of database: 8,474,633
Effective search space: 1330517381
Effective search space used: 1330517381
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 110 (47.0 bits)