BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0431800 Os03g0431800|J065204N07
         (74 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G17770.1  | chr4:9877055-9880084 FORWARD LENGTH=863             60   2e-10
AT1G23870.1  | chr1:8432695-8435506 FORWARD LENGTH=868             54   1e-08
AT1G60140.1  | chr1:22177246-22180073 REVERSE LENGTH=862           52   9e-08
AT1G68020.2  | chr1:25497493-25500241 FORWARD LENGTH=861           51   1e-07
AT2G18700.1  | chr2:8109043-8111799 FORWARD LENGTH=863             50   3e-07

>AT4G17770.1 | chr4:9877055-9880084 FORWARD LENGTH=863
          Length = 862

 Score = 60.5 bits (145), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 41/66 (62%)

Query: 2   KILHFIMHLIVIINVTRDSMNFILYECIVCRQKNDELDNSRGCDTNCHQPSPLIVFEFLS 61
           +I ++++    ++   RD MN I YE I+CRQ N +L+ + G D +  + S L+V EF+ 
Sbjct: 424 RIAYYVIAECCLVTAVRDGMNLIPYEYIICRQGNPKLNETIGLDPSAAKKSMLVVSEFIG 483

Query: 62  CSPSFS 67
           CSPS S
Sbjct: 484 CSPSLS 489



>AT1G23870.1 | chr1:8432695-8435506 FORWARD LENGTH=868
          Length = 867

 Score = 54.3 bits (129), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 37/66 (56%)

Query: 2   KILHFIMHLIVIINVTRDSMNFILYECIVCRQKNDELDNSRGCDTNCHQPSPLIVFEFLS 61
           K  ++ M    ++N  RD MN + Y+ I+CRQ    +D + G   +  + S L+V EF+ 
Sbjct: 424 KTAYYAMADCCLVNAVRDGMNLVPYKYIICRQGTPGMDKAMGISHDSARTSMLVVSEFIG 483

Query: 62  CSPSFS 67
           CSPS S
Sbjct: 484 CSPSLS 489



>AT1G60140.1 | chr1:22177246-22180073 REVERSE LENGTH=862
          Length = 861

 Score = 51.6 bits (122), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 32/55 (58%)

Query: 13  IINVTRDSMNFILYECIVCRQKNDELDNSRGCDTNCHQPSPLIVFEFLSCSPSFS 67
           I+N  RD MN + Y+  VCRQ    ++ S G   +  + S L++ EF+ CSPS S
Sbjct: 435 IVNAVRDGMNLVPYKYTVCRQGTPSMNKSLGVSDDLPRTSTLVLSEFIGCSPSLS 489



>AT1G68020.2 | chr1:25497493-25500241 FORWARD LENGTH=861
          Length = 860

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 1/67 (1%)

Query: 2   KILHFIMHLIVIINVTRDSMNFILYECIVCRQKNDELDNSRGCDTNC-HQPSPLIVFEFL 60
           ++ ++++    ++   RD MN I YE IV RQ N++LD     + N  ++ S L+V EF+
Sbjct: 434 RVAYYVVAECCLVTAVRDGMNLIPYEYIVSRQGNEKLDKILKLEANNRNKKSMLVVSEFI 493

Query: 61  SCSPSFS 67
            CSPS S
Sbjct: 494 GCSPSLS 500



>AT2G18700.1 | chr2:8109043-8111799 FORWARD LENGTH=863
          Length = 862

 Score = 49.7 bits (117), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 38/66 (57%)

Query: 2   KILHFIMHLIVIINVTRDSMNFILYECIVCRQKNDELDNSRGCDTNCHQPSPLIVFEFLS 61
           K+ ++ +   V++N  RD MN + Y+  V RQ +  LD + G   +  + S +IV EF+ 
Sbjct: 416 KVAYYAISECVVVNAVRDGMNLVPYKYTVTRQGSPALDAALGFGEDDVRKSVIIVSEFIG 475

Query: 62  CSPSFS 67
           CSPS S
Sbjct: 476 CSPSLS 481



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.333    0.145    0.477 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,781,315
Number of extensions: 66132
Number of successful extensions: 174
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 5
Length of query: 74
Length of database: 11,106,569
Length adjustment: 46
Effective length of query: 28
Effective length of database: 9,845,433
Effective search space: 275672124
Effective search space used: 275672124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 104 (44.7 bits)