BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0427000 Os03g0427000|AK069737
(247 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G39360.1 | chr5:15753313-15754062 REVERSE LENGTH=250 392 e-109
AT5G15440.1 | chr5:5013158-5014131 FORWARD LENGTH=294 391 e-109
AT3G63060.1 | chr3:23300638-23301456 REVERSE LENGTH=273 184 4e-47
>AT5G39360.1 | chr5:15753313-15754062 REVERSE LENGTH=250
Length = 249
Score = 392 bits (1007), Expect = e-109, Method: Compositional matrix adjust.
Identities = 176/247 (71%), Positives = 214/247 (86%), Gaps = 1/247 (0%)
Query: 2 VLVVKQYRCTHSASCLCLKGHISEDALFLVFRHMNWNPRMIALFSCVSKWFDDIAKRVLW 61
+++ KQYRC HSA+C C KGH+SE+ LFL+ +H+NWNP +IA SCV KWFDD+AKR+LW
Sbjct: 1 MIIAKQYRCIHSATCHCTKGHLSEEVLFLMVQHLNWNPNVIATLSCVCKWFDDLAKRLLW 60
Query: 62 KEFCHARAPRMMQDLHSGGSHIVDGNWKALGKLLIHCAGCTKGGLFGNIHVPGHFVFRTR 121
KEFC ARAP+MM DL S GSH VDG+W+ALGKLLI+C+G +KGGLF ++ + GHFV RTR
Sbjct: 61 KEFCRARAPKMMSDLQSSGSHSVDGSWRALGKLLIYCSGSSKGGLFNDVQISGHFVHRTR 120
Query: 122 FSRTCGKSILPPQCRT-DVLYVSDPCEHLDQGEEGDLGFFRGIFKSFASSKVKKMLIEKQ 180
FSRT G+S LPPQCRT D+LYVSDPCEHLDQGE+GDLGFFRGIFKSF+ SKV+K+LI+K
Sbjct: 121 FSRTSGRSFLPPQCRTDDILYVSDPCEHLDQGEDGDLGFFRGIFKSFSMSKVRKLLIKKG 180
Query: 181 AKFHPKEVCPYCKAKLWNLLQANMIPRSASIRLDAYDDSVEYYICLNGHILGLCTLMPVS 240
FHP EVCPYCKAKLW++LQA MIP+SAS RL AY+DS+EYY+CLNGH+LG+CTL+P+S
Sbjct: 181 TPFHPTEVCPYCKAKLWSMLQAKMIPQSASCRLGAYEDSIEYYVCLNGHMLGVCTLLPLS 240
Query: 241 DSEDAKE 247
DSE A E
Sbjct: 241 DSEGASE 247
>AT5G15440.1 | chr5:5013158-5014131 FORWARD LENGTH=294
Length = 293
Score = 391 bits (1004), Expect = e-109, Method: Compositional matrix adjust.
Identities = 172/245 (70%), Positives = 212/245 (86%), Gaps = 1/245 (0%)
Query: 2 VLVVKQYRCTHSASCLCLKGHISEDALFLVFRHMNWNPRMIALFSCVSKWFDDIAKRVLW 61
+++ KQY CTHS SC C KGH++ED L LVF+H+NWNP+++A SCV +WFDD AKRVLW
Sbjct: 1 MILPKQYCCTHSPSCQCTKGHLNEDVLLLVFQHLNWNPKLVATLSCVCRWFDDFAKRVLW 60
Query: 62 KEFCHARAPRMMQDLHSGGSHIVDGNWKALGKLLIHCAGCTKGGLFGN-IHVPGHFVFRT 120
KEFC RAP+MM DL S GSH +DGNW+ALGKLLI+C+GCT+GGLF + + +PGHFV+RT
Sbjct: 61 KEFCKTRAPKMMLDLQSSGSHCIDGNWRALGKLLIYCSGCTQGGLFNSSVQIPGHFVYRT 120
Query: 121 RFSRTCGKSILPPQCRTDVLYVSDPCEHLDQGEEGDLGFFRGIFKSFASSKVKKMLIEKQ 180
RFSRT G+S+LPPQCRTDVLYV DPCEHLDQGEEGD+G FRGIFKSF +SKV+K++I K
Sbjct: 121 RFSRTLGRSLLPPQCRTDVLYVCDPCEHLDQGEEGDVGLFRGIFKSFPTSKVRKVIINKA 180
Query: 181 AKFHPKEVCPYCKAKLWNLLQANMIPRSASIRLDAYDDSVEYYICLNGHILGLCTLMPVS 240
FHP EVCPYCKAKLW++LQA +IP+SA IRL+AY+D +EY++CLNGH+LG+CTL P+S
Sbjct: 181 VPFHPSEVCPYCKAKLWSMLQAKIIPQSACIRLEAYEDCIEYFVCLNGHLLGICTLAPLS 240
Query: 241 DSEDA 245
DSEDA
Sbjct: 241 DSEDA 245
>AT3G63060.1 | chr3:23300638-23301456 REVERSE LENGTH=273
Length = 272
Score = 184 bits (466), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 89/224 (39%), Positives = 134/224 (59%), Gaps = 4/224 (1%)
Query: 21 GHISEDALFLVFRHMNWNPRMIALFSCVSKWFDDIAKRVLWKEFCHARAPRMMQDLHSGG 80
G +E L LVF ++W+ + + +S+ F IA+R+LW+ C RAP M+ L
Sbjct: 33 GIENERVLVLVFESISWDIHTLCTIASLSRRFCAIARRILWRRLCVNRAPGMVAALSGED 92
Query: 81 -SHIVDGNWKALGKLLIHCAGCTKGGLFGNIHVP--GHFVFRTRFSRTCGKSILPPQCRT 137
S +DG W AL KL+ C G F N+ P GHF +RFS+T G+ LP CR
Sbjct: 93 PSGRIDGGWHALAKLMFFCGGGESTRYF-NLSQPTSGHFACESRFSKTSGRFFLPKNCRR 151
Query: 138 DVLYVSDPCEHLDQGEEGDLGFFRGIFKSFASSKVKKMLIEKQAKFHPKEVCPYCKAKLW 197
D+LY+SDPCEH G + LG FRG+F+ F SK ++ L+ +QA K CPYC ++W
Sbjct: 152 DLLYMSDPCEHQAVGGDEHLGVFRGVFREFMRSKTRECLVRRQAALEEKVRCPYCGGRVW 211
Query: 198 NLLQANMIPRSASIRLDAYDDSVEYYICLNGHILGLCTLMPVSD 241
++ A ++P+SA+ RL + + +E+++C+NGH+ G C L+P+S
Sbjct: 212 SMTAARLVPKSAARRLGSREGGLEFFVCVNGHLHGTCWLIPLSS 255
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.140 0.466
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,901,833
Number of extensions: 242825
Number of successful extensions: 555
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 550
Number of HSP's successfully gapped: 4
Length of query: 247
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 151
Effective length of database: 8,474,633
Effective search space: 1279669583
Effective search space used: 1279669583
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 110 (47.0 bits)