BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0425800 Os03g0425800|AK100427
(520 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G03470.1 | chr2:1045694-1047130 REVERSE LENGTH=451 173 3e-43
AT1G26580.1 | chr1:9185620-9187213 FORWARD LENGTH=494 165 7e-41
AT1G13880.1 | chr1:4749603-4750967 FORWARD LENGTH=425 159 5e-39
AT4G11400.1 | chr4:6938717-6940539 FORWARD LENGTH=574 94 2e-19
AT5G04110.1 | chr5:1110757-1114112 REVERSE LENGTH=547 83 4e-16
AT2G46040.1 | chr2:18935684-18937807 REVERSE LENGTH=563 60 2e-09
>AT2G03470.1 | chr2:1045694-1047130 REVERSE LENGTH=451
Length = 450
Score = 173 bits (438), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 89/202 (44%), Positives = 122/202 (60%), Gaps = 20/202 (9%)
Query: 198 VDDIDSPIHDHLPRKAVAIGPDHQADIPEWRPRISMTVPYGSGSCADLSYSSVSTSGSAP 257
V+D+ + + + PRK V +G +HQADIPE+ + A
Sbjct: 107 VEDVYTCLMNQPPRKQVLVGSNHQADIPEFVK------------------EEILDQSEAR 148
Query: 258 RDEDSESDKWIKHCVIEMPSSCSVAWVGDHGRDCGCSDEGSIRCVRRHVLESRENLKRIF 317
ED E K ++ CVI M S + G ++C C D+GSIRCVRRH++E+RE+L
Sbjct: 149 TKEDLEG-KLMRKCVIPMSDS-DLCGTGQGRKECLCLDKGSIRCVRRHIIEARESLVETI 206
Query: 318 GEDKFRELGLCDMGEDIAQRWTDEEESLFYRVVYSNPPSLGKNFWHFLPRALPGKTSMEL 377
G ++F ELGLC+MGE++A WT+EEE LF++VVYSNP S G++FW L P +T EL
Sbjct: 207 GYERFMELGLCEMGEEVASLWTEEEEDLFHKVVYSNPFSAGRDFWKQLKGTFPSRTMKEL 266
Query: 378 VSYYFNVFMLRKRAQQNRSEPL 399
VSYYFNVF+LR+R QNR + L
Sbjct: 267 VSYYFNVFILRRRGIQNRFKAL 288
>AT1G26580.1 | chr1:9185620-9187213 FORWARD LENGTH=494
Length = 493
Score = 165 bits (417), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 116/329 (35%), Positives = 163/329 (49%), Gaps = 49/329 (14%)
Query: 207 DHLPRKAVAIGPDHQADIPEWRPRISMTVPYGSGSCADLSYSSVSTSGSAPRDEDS---E 263
D +K V IGP HQA+IPEW GS + ++ TSG + ++ S +
Sbjct: 128 DQRAKKQVPIGPGHQAEIPEWE---------GSQT------GNIETSGMSVQNHISGCAD 172
Query: 264 SDKWIKHCVIEMPSSCSVAWVGD---HGRD-CGCSDEGSIRCVRRHVLESRENLKRIFGE 319
+K VI MP +VA + D GR C C D S+RCV +H+ E+RE L + FG
Sbjct: 173 GEKLFGTSVIPMPGLTTVAHIDDIVGKGRKFCVCRDRDSVRCVCQHIKEAREELVKTFGN 232
Query: 320 DKFRELGLCDMGEDIAQRWTDEEESLFYRVVYSNPPSLGKNFWHFLPRALPGKTSMELVS 379
+ F+ELGLC+MGE A +W+DE+ LF+ VVYSNP +LG+NFW L A +T E+VS
Sbjct: 233 ETFKELGLCEMGEKGALKWSDEDAQLFHEVVYSNPVTLGQNFWRHLEAAFCSRTQKEIVS 292
Query: 380 YYFNVFMLRKRAQQNRSEPLHXXX--------XXXXXXXXXXXXXXXXXAVESPAHD--- 428
+YFNVF+LR+RA QNR+ L A+ESP H
Sbjct: 293 FYFNVFVLRRRAIQNRAFILDIDSDDDEWHGCYGGSSGTRYVEEDEEDSAIESPLHQGTK 352
Query: 429 --YYVNNPMSPE-----SEDSFHEKVADSLSGLRD----GPSQKPLGSNTDNPGGDADVQ 477
Y +++ E S D + + +GL D + + + + N G +V+
Sbjct: 353 KVYPLHHEEGEEDVSHSSNDEDDDDTKEGGTGLYDEHKMSSTVEYMDRFSGNNGERLNVE 412
Query: 478 DESCTSFEDHNGAHGSNGVQCAEFHMMLP 506
D+SCTSFE N V CAE +P
Sbjct: 413 DDSCTSFE-----LARNAVNCAEKDETVP 436
>AT1G13880.1 | chr1:4749603-4750967 FORWARD LENGTH=425
Length = 424
Score = 159 bits (401), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 85/191 (44%), Positives = 117/191 (61%), Gaps = 21/191 (10%)
Query: 210 PRKAVAIGPDHQADIPEWRPRISMTVPYGSGSCADLSYSSVSTSGSAPRDEDSESDKWIK 269
PRK V IG D+QADIPE C + S G DE+ + K
Sbjct: 124 PRKTVPIGSDYQADIPE---------------CVKEEANDQSGQGVG-YDEEQVTGK--- 164
Query: 270 HCVIEMP-SSCSVAWVGDHGRDCGCSDEGSIRCVRRHVLESRENLKRIFGEDKFRELGLC 328
CVI MP V +G ++C C D+GSIRCV++H++E+RE+L G D+ ++GLC
Sbjct: 165 -CVIPMPDCETEVCKIGKGRKECICLDKGSIRCVQQHIMENREDLFATIGYDRCLDIGLC 223
Query: 329 DMGEDIAQRWTDEEESLFYRVVYSNPPSLGKNFWHFLPRALPGKTSMELVSYYFNVFMLR 388
+MGE++A R T++EE LF+ +VYSNP S+ ++FW L A P +T E+VSYYFNVF+LR
Sbjct: 224 EMGEEVAARLTEDEEDLFHEIVYSNPVSMDRDFWKHLKSAFPSRTMKEIVSYYFNVFILR 283
Query: 389 KRAQQNRSEPL 399
+RA QNRS+ L
Sbjct: 284 RRAIQNRSKSL 294
>AT4G11400.1 | chr4:6938717-6940539 FORWARD LENGTH=574
Length = 573
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 89/192 (46%), Gaps = 31/192 (16%)
Query: 209 LPRKAVAIGPDHQADIPEWRPRISMTVPYGSGSCADLSYSSVSTSGSAPRDEDSESDKWI 268
+PR+ + +G HQA + EW + S D + T P E+SE+
Sbjct: 369 IPRRCIKVGHQHQAQVDEW-----------TESGVDSDSKWLGTRIWPP--ENSEA---- 411
Query: 269 KHCVIEMPSSCSVAWVGDHGR--DCGCSDEGSIRCVRRHVLESRENLKRIFGEDKFRELG 326
+ + VG GR C C G + C R H+ E R LKR G+D F
Sbjct: 412 ------LDQTLGNDLVG-KGRPDSCSCELSGFVECTRLHIAEKRMELKRELGDDFF-HWR 463
Query: 327 LCDMGEDIAQRWTDEEESLFYRVVYSNPPSLGKNFWHFLPRALPGKTSMELVSYYFNVFM 386
MGE++ RWT+EEE F ++ ++P S FW + P K ELVSYYFNVF+
Sbjct: 464 FNQMGEEVCLRWTEEEEKRFKDMIIADPQS----FWTNAAKNFPKKKREELVSYYFNVFL 519
Query: 387 LRKRAQQNRSEP 398
+ +R QNR P
Sbjct: 520 INRRRYQNRVTP 531
>AT5G04110.1 | chr5:1110757-1114112 REVERSE LENGTH=547
Length = 546
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 83/184 (45%), Gaps = 25/184 (13%)
Query: 211 RKAVAIGPDHQADIPEWRPRISMTVPYGSGSCADLSYSSVSTSGSAPRDEDSESDKWIKH 270
R A+ IGP QA+IP W YGS DS + +W+
Sbjct: 358 RPAIPIGPRFQAEIPVWIAPTKKGKFYGSPG-------------------DSNTLRWLGT 398
Query: 271 CV---IEMPSSCSVAWVGDHGRD-CGCSDEGSIRCVRRHVLESRENLKRIFGEDKFRELG 326
V + + VG+ D C C+ S C++RH E++E L++ F
Sbjct: 399 GVWPTYSLKKTVHSKKVGEGRSDSCSCASPRSTNCIKRHKKEAQELLEKEINR-AFSTWE 457
Query: 327 LCDMGEDIAQR-WTDEEESLFYRVVYSNPPSLGKNFWHFLPRALPGKTSMELVSYYFNVF 385
MGE+I + WT +EE F +V NP S FW F A P K+ +L+SYY+NVF
Sbjct: 458 FDQMGEEIVLKSWTAKEERRFEALVKKNPLSSSDGFWEFASNAFPQKSKKDLLSYYYNVF 517
Query: 386 MLRK 389
++++
Sbjct: 518 LIKR 521
>AT2G46040.1 | chr2:18935684-18937807 REVERSE LENGTH=563
Length = 562
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 58/108 (53%), Gaps = 2/108 (1%)
Query: 291 CGCSDEGSIRCVRRHVLESRENLKRIFGEDKFRELGLCDMGEDIAQRWTDEEESLFYRVV 350
CGC + GSI CV+ H+ R+ LK G F MGE Q WTD E + +
Sbjct: 416 CGCHNPGSIECVKFHITAKRDKLKLELGP-AFYMWCFDVMGECTLQYWTDLELKKI-KSL 473
Query: 351 YSNPPSLGKNFWHFLPRALPGKTSMELVSYYFNVFMLRKRAQQNRSEP 398
S+PPSL F H LP K+ ++VSY++NV +L+ RA Q+R P
Sbjct: 474 MSSPPSLSPAFIHQAKMILPSKSRGKIVSYFYNVTLLQYRASQSRITP 521
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.132 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,602,551
Number of extensions: 588296
Number of successful extensions: 1230
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1222
Number of HSP's successfully gapped: 6
Length of query: 520
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 417
Effective length of database: 8,282,721
Effective search space: 3453894657
Effective search space used: 3453894657
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 114 (48.5 bits)