BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0423800 Os03g0423800|AK069431
         (273 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G03070.1  | chr2:905978-908792 FORWARD LENGTH=525               60   1e-09

>AT2G03070.1 | chr2:905978-908792 FORWARD LENGTH=525
          Length = 524

 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 52/103 (50%), Gaps = 6/103 (5%)

Query: 122 QQYQNRQMQAGRMQPGMSQSQLNQGNQLRSHISQFTGAANSAMFTXXXXXXXXXXXXXIX 181
           QQ+Q RQ+  G +Q  MSQ QLN    +  H++QF+G ANSA+FT             + 
Sbjct: 377 QQFQARQLSGGHIQHSMSQGQLNPA--MNRHLNQFSGGANSALFTSAQGSPSSQMIPNMS 434

Query: 182 XXXXXXXXXXXXXXXNQYSLTGGHPQRSHPSQMLTDQMFGMGG 224
                           Q+ ++G +PQRSH SQML DQMF   G
Sbjct: 435 SMQSQTLVPRMQ----QFGVSGTNPQRSHSSQMLGDQMFNTSG 473



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.311    0.123    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,328,321
Number of extensions: 104595
Number of successful extensions: 487
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 483
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 176
Effective length of database: 8,447,217
Effective search space: 1486710192
Effective search space used: 1486710192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 111 (47.4 bits)