BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0421700 Os03g0421700|Os03g0421700
         (115 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G16700.1  | chr3:5687809-5689664 FORWARD LENGTH=225            140   2e-34
AT4G15940.1  | chr4:9038361-9040163 FORWARD LENGTH=223            132   3e-32

>AT3G16700.1 | chr3:5687809-5689664 FORWARD LENGTH=225
          Length = 224

 Score =  140 bits (352), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 65/88 (73%), Positives = 77/88 (87%)

Query: 15  IPKSAVANPNDLELWLKVDDELRQKGSTSDMIFKIPSLISYISSIMTLMEGDVILTGTPE 74
           +PK+ V +PN+LELWLKVDDE RQKG T DMIFK+P LISYISS+MTL +GDVILTGTPE
Sbjct: 131 LPKAMVLDPNNLELWLKVDDETRQKGWTKDMIFKVPYLISYISSVMTLFKGDVILTGTPE 190

Query: 75  GVGPVRPGQKIKAGITGLVDVEFDVQKR 102
           G+GPV+ GQKI AGITGL +V+FDV +R
Sbjct: 191 GIGPVKIGQKITAGITGLSEVQFDVGRR 218



>AT4G15940.1 | chr4:9038361-9040163 FORWARD LENGTH=223
          Length = 222

 Score =  132 bits (333), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 65/88 (73%), Positives = 76/88 (86%), Gaps = 1/88 (1%)

Query: 15  IPKSAVANPNDLELWLKVDDELRQKGSTSDMIFKIPSLISYISSIMTLMEGDVILTGTPE 74
           +PK+ V +P++LELWLKVD E RQKG T DMIFK+P LISYISSIMTL  GDVILTGTPE
Sbjct: 131 LPKAMVRDPDNLELWLKVDGETRQKGLTKDMIFKVPYLISYISSIMTLY-GDVILTGTPE 189

Query: 75  GVGPVRPGQKIKAGITGLVDVEFDVQKR 102
           GVGPV+ GQKI AGITGL +V+FDV++R
Sbjct: 190 GVGPVKIGQKITAGITGLSEVQFDVERR 217



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.134    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,477,379
Number of extensions: 93085
Number of successful extensions: 247
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 246
Number of HSP's successfully gapped: 2
Length of query: 115
Length of database: 11,106,569
Length adjustment: 84
Effective length of query: 31
Effective length of database: 8,803,625
Effective search space: 272912375
Effective search space used: 272912375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 104 (44.7 bits)