BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0421400 Os03g0421400|AK103193
         (266 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G03510.1  | chr2:1066717-1068934 FORWARD LENGTH=357            411   e-115

>AT2G03510.1 | chr2:1066717-1068934 FORWARD LENGTH=357
          Length = 356

 Score =  411 bits (1057), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 189/251 (75%), Positives = 232/251 (92%), Gaps = 1/251 (0%)

Query: 12  KNIPCGTKGGVMISFDKIEVVNRLHKEFVHETLLNYGVHYDKTWIYDKIHHEINQFCSAH 71
           ++IPCGTKGGV+I+F+KIEVVNRL K+FV++TLLNYGV+YD TWIYDKIHHEINQFCS+H
Sbjct: 96  RDIPCGTKGGVLITFEKIEVVNRLRKDFVYDTLLNYGVNYDNTWIYDKIHHEINQFCSSH 155

Query: 72  SLQQVYIDLFDQIDETMKEAIQRDCTRYAPGIEIISVRVTKPNIPDSIRRNFELMEEERT 131
           SLQQVYID+FDQIDE MK+A+Q DCTRYAPGIEI+SVRVTKP IP+S+RRNFE MEEERT
Sbjct: 156 SLQQVYIDIFDQIDERMKDALQADCTRYAPGIEILSVRVTKPKIPESVRRNFEQMEEERT 215

Query: 132 KALIAIEKQKVAEKEAETQKKIALSEAEKNAQVSKILMEQKLMEKDSSKRQQQIDNEMFL 191
           K LIAIEKQ+VAEKEAET+K +A+SEAEKNA VSKILM+QKL EKDSS+R+  I+N+M+L
Sbjct: 216 KVLIAIEKQRVAEKEAETKKIMAISEAEKNANVSKILMQQKLTEKDSSRREADIENQMYL 275

Query: 192 AREKALTDANYYRITKEAEANRLKLTPEYLELRFIESIANNSKIFFGEKIPNMIMDQRML 251
            R+K+L DA+YYR+ +EAEAN+LKLTPE+LEL+FI++IA N+KIFFG+K+PNM++DQR+L
Sbjct: 276 DRQKSLADADYYRVLREAEANKLKLTPEFLELKFIDAIARNTKIFFGDKVPNMVLDQRLL 335

Query: 252 RNYLDNGSTKD 262
            N+L N STKD
Sbjct: 336 GNFL-NHSTKD 345



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.132    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,437,681
Number of extensions: 218429
Number of successful extensions: 1348
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1352
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 169
Effective length of database: 8,447,217
Effective search space: 1427579673
Effective search space used: 1427579673
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)