BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0415500 Os03g0415500|AK108435
(208 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G20350.1 | chr1:7043737-7044393 FORWARD LENGTH=219 152 1e-37
AT2G37410.1 | chr2:15698119-15698850 REVERSE LENGTH=244 146 6e-36
AT5G11690.1 | chr5:3761759-3762160 FORWARD LENGTH=134 108 1e-24
>AT1G20350.1 | chr1:7043737-7044393 FORWARD LENGTH=219
Length = 218
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 116/216 (53%), Gaps = 16/216 (7%)
Query: 4 SEREPCPDRILDDXXXXXXXXXXXXXXXHFLRGAYNSPNGHRLSGGSQAVRMSVPRTGGN 63
S REPCPDRILDD H +RG YNSP G RLSGG QA+RMS PR+GG+
Sbjct: 6 SSREPCPDRILDDVGGAFAMGAVGGSAYHLIRGIYNSPGGARLSGGVQALRMSGPRSGGS 65
Query: 64 FAAWGGLFSAFDCAMVHARQKEDPWNSILAGAATGAVLSLRQGPRXXXXXXXXXXXXXXX 123
F+ WGGL+S FDCA+V+ARQKEDPWNSIL+GAATG LSLRQG
Sbjct: 66 FSVWGGLYSTFDCALVYARQKEDPWNSILSGAATGGFLSLRQGLGASARSALVGGVLLAM 125
Query: 124 XXXXGILLTRTMATLPQ----EDHAYXXXXXXXXXXXXXXX---------XXXIAWVRGI 170
GI+L + +T EDHA ++W +
Sbjct: 126 IEGVGIMLNKVQSTAHNEQFMEDHAATSLPYGMGQISGQSVPVPETSSSSSGSVSWFGSL 185
Query: 171 FGRKEEKPAAAGGDRKSDVLESFETPSPPIPSFDYR 206
F +K+E + ++ +LESF+ +PP+P+++++
Sbjct: 186 FKKKKETEDHH-SESRTHILESFD--APPVPTYEFK 218
>AT2G37410.1 | chr2:15698119-15698850 REVERSE LENGTH=244
Length = 243
Score = 146 bits (369), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 68/133 (51%), Positives = 81/133 (60%)
Query: 4 SEREPCPDRILDDXXXXXXXXXXXXXXXHFLRGAYNSPNGHRLSGGSQAVRMSVPRTGGN 63
+ REPCPDRILDD HF++G YNSP G R GG+Q+V M+ PRTGG+
Sbjct: 6 TSREPCPDRILDDIGGAFGMGAVGGSAFHFIKGTYNSPKGSRFVGGTQSVSMNAPRTGGS 65
Query: 64 FAAWGGLFSAFDCAMVHARQKEDPWNSILAGAATGAVLSLRQGPRXXXXXXXXXXXXXXX 123
FA WGGLFS FDC MV+ RQKEDPWNSI+AGAATG LS+RQG
Sbjct: 66 FAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGAGAASRSAIFGGVLLAL 125
Query: 124 XXXXGILLTRTMA 136
GI+L + +A
Sbjct: 126 IEGAGIMLNKVLA 138
>AT5G11690.1 | chr5:3761759-3762160 FORWARD LENGTH=134
Length = 133
Score = 108 bits (271), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 65/102 (63%)
Query: 5 EREPCPDRILDDXXXXXXXXXXXXXXXHFLRGAYNSPNGHRLSGGSQAVRMSVPRTGGNF 64
+E RI++ HF+RGAYNSP G R GG+QA M+ PR GG F
Sbjct: 7 SKEHGLYRIVNAIGYAFGAGAVGGSVYHFVRGAYNSPIGARYVGGTQAASMNAPRLGGTF 66
Query: 65 AAWGGLFSAFDCAMVHARQKEDPWNSILAGAATGAVLSLRQG 106
A +GGL S FD A+V R+KEDPWNSI+AGAATG VLS+R+G
Sbjct: 67 AVFGGLLSTFDYALVRIRKKEDPWNSIVAGAATGGVLSIRKG 108
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.136 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,633,830
Number of extensions: 117128
Number of successful extensions: 225
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 3
Length of query: 208
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 114
Effective length of database: 8,529,465
Effective search space: 972359010
Effective search space used: 972359010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)