BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0411800 Os03g0411800|AK121551
         (358 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G55910.1  | chr1:20906161-20907225 FORWARD LENGTH=327          316   2e-86
AT5G59520.1  | chr5:23991447-23992762 REVERSE LENGTH=354          270   8e-73

>AT1G55910.1 | chr1:20906161-20907225 FORWARD LENGTH=327
          Length = 326

 Score =  316 bits (809), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 163/319 (51%), Positives = 203/319 (63%), Gaps = 41/319 (12%)

Query: 50  DLRARGLVAAKLWCLAVVFAGTLAGGVSPYFMRWNDAFLALGTQFAGGVFLGTAMMHFLA 109
           DL+++ L++ K+ CL ++F  T   GVSPYF++W+  FL LGTQFAGGVFL TA+MHFL+
Sbjct: 39  DLKSKSLISVKIACLVIIFVLTFISGVSPYFLKWSQGFLVLGTQFAGGVFLATALMHFLS 98

Query: 110 DANETFADLL-------PGTAYPFAFMLACAGYVLTMLADCAISFVVXXXXXXXXXXXXX 162
           DA+ETF  LL       P  AYPFA+MLACAG++LTMLAD  I+ +              
Sbjct: 99  DADETFRGLLTAEGESEPSPAYPFAYMLACAGFMLTMLADSVIAHI-------------- 144

Query: 163 XXXXXXXKLSSTNGNXXXXXXXXXXXXXXXXXXMLRNAST---LGDSVLLIAALCFHSVF 219
                    S T  +                    R+A+T   +GDS+LLI ALCFHSVF
Sbjct: 145 --------YSKTQNDLELQGEDKSNQ---------RSATTETSIGDSILLIVALCFHSVF 187

Query: 220 EGIAIGVAETKADAWKALWTISLHKIFAAIAMGIALLRMLPDRPFLSCFGYAFAFAVSSP 279
           EGIAIG++ETK+DAW+ALWTI+LHKIFAAIAMGIALLRM+PDRP  S   Y+FAFA+SSP
Sbjct: 188 EGIAIGISETKSDAWRALWTITLHKIFAAIAMGIALLRMIPDRPLFSSITYSFAFAISSP 247

Query: 280 XXXXXXXXXDATTQGRVADWIFAVSMGLATGIFIYVSINHLLSKGYTPLRPVAADTPAGR 339
                    DATTQG +ADWIFA+SM LA G+F+YVS+NHLL+KGY P + V  D P  +
Sbjct: 248 IGVAIGIVIDATTQGSIADWIFALSMSLACGVFVYVSVNHLLAKGYRPNKKVHVDEPRYK 307

Query: 340 XXXXXXXXXXXXXXMIWDT 358
                         MIWDT
Sbjct: 308 FLAVLFGVVVIAIVMIWDT 326



>AT5G59520.1 | chr5:23991447-23992762 REVERSE LENGTH=354
          Length = 353

 Score =  270 bits (691), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 144/308 (46%), Positives = 186/308 (60%), Gaps = 8/308 (2%)

Query: 50  DLRARGLVAAKLWCLAVVFAGTLAGGVSPYFMRWNDAFLALGTQFAGGVFLGTAMMHFLA 109
           +LR++ LV  K++C+ ++F  T   GVSPYF RWN++FL LGTQF+GG+FL TA++HFL+
Sbjct: 54  NLRSKSLVLVKIYCIIILFFSTFLAGVSPYFYRWNESFLLLGTQFSGGIFLATALIHFLS 113

Query: 110 DANETFADLLPGTAYPFAFMLACAGYVLTMLADCAISFVVXXXXXXXXXXXXXXXXXXXX 169
           DANETF  L     YP+AFMLA AGY LTMLAD A++FV                     
Sbjct: 114 DANETFRGL-KHKEYPYAFMLAAAGYCLTMLADVAVAFVAAGSNNNHVGASVGESREDDD 172

Query: 170 KLSSTNGNXXXXXXXXXXXXXXXXXXMLRNASTLGDSVLLIAALCFHSVFEGIAIGVAET 229
                 G                    L   S  GD+ LLI ALCFHS+FEGIAIG+++T
Sbjct: 173 VAVKEEGRREIKSGVDVSQA-------LIRTSGFGDTALLIFALCFHSIFEGIAIGLSDT 225

Query: 230 KADAWKALWTISLHKIFAAIAMGIALLRMLPDRPFLSCFGYAFAFAVSSPXXXXXXXXXD 289
           K+DAW+ LWTISLHK+FAA+AMGIALL+++P RPF     Y+FAF +SSP         +
Sbjct: 226 KSDAWRNLWTISLHKVFAAVAMGIALLKLIPKRPFFLTVVYSFAFGISSPIGVGIGIGIN 285

Query: 290 ATTQGRVADWIFAVSMGLATGIFIYVSINHLLSKGYTPLRPVAADTPAGRXXXXXXXXXX 349
           AT+QG   DW +A+SMGLA G+F+YV++NHL+SKGY P      D P  +          
Sbjct: 286 ATSQGAGGDWTYAISMGLACGVFVYVAVNHLISKGYKPREECYFDKPIYKFIAVFLGVAL 345

Query: 350 XXXXMIWD 357
               MIWD
Sbjct: 346 LSVVMIWD 353



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.328    0.138    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,412,005
Number of extensions: 164443
Number of successful extensions: 446
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 443
Number of HSP's successfully gapped: 4
Length of query: 358
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 258
Effective length of database: 8,364,969
Effective search space: 2158162002
Effective search space used: 2158162002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 112 (47.8 bits)