BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0411600 Os03g0411600|Os03g0411600
         (178 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G65650.1  | chr5:26239588-26241195 FORWARD LENGTH=186           75   1e-14
AT4G36660.1  | chr4:17285953-17287281 REVERSE LENGTH=180           74   5e-14
AT1G19380.1  | chr1:6698129-6698662 FORWARD LENGTH=148             69   1e-12

>AT5G65650.1 | chr5:26239588-26241195 FORWARD LENGTH=186
          Length = 185

 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/62 (59%), Positives = 44/62 (70%), Gaps = 1/62 (1%)

Query: 98  KLVGRMWDMYTRTGDEVRLPRFWQEAFEAAYEELAGDDMQVRDAAISEIARMSAHRLELE 157
           K+V  MWD+Y   G  +RLPRFWQEAFEAAYEEL  D   V +AAISEIARMS   + ++
Sbjct: 91  KVVKHMWDVYN-NGRRIRLPRFWQEAFEAAYEELTSDVPDVVEAAISEIARMSIRSIVID 149

Query: 158 QP 159
            P
Sbjct: 150 PP 151



>AT4G36660.1 | chr4:17285953-17287281 REVERSE LENGTH=180
          Length = 179

 Score = 73.6 bits (179), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 47/70 (67%), Gaps = 1/70 (1%)

Query: 98  KLVGRMWDMYTRTGDEVRLPRFWQEAFEAAYEELAGDDMQVRDAAISEIARMSAHRLELE 157
           K+V  MWD+YT +   ++LPRFWQEAF AAYEEL  D   VR+AAI EIA+MSA  + L+
Sbjct: 94  KVVKHMWDVYTNS-RRIKLPRFWQEAFVAAYEELTSDVPGVREAAIGEIAKMSARSITLD 152

Query: 158 QPVNEEEKTR 167
            P +     R
Sbjct: 153 PPPSRSMSAR 162



>AT1G19380.1 | chr1:6698129-6698662 FORWARD LENGTH=148
          Length = 147

 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 44/57 (77%), Gaps = 1/57 (1%)

Query: 98  KLVGRMWDMYTRTGDEVRLPRFWQEAFEAAYEELAGDDMQVRDAAISEIARMSAHRL 154
           K+V +MWD+Y R+G  V++PRFW+EAFEAAYE L  D   VR+AA+S+IA++S  R 
Sbjct: 79  KVVRQMWDVYGRSGG-VKVPRFWREAFEAAYEFLISDSAAVRNAAVSDIAKLSLVRF 134



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.131    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,055,386
Number of extensions: 59458
Number of successful extensions: 213
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 3
Length of query: 178
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 86
Effective length of database: 8,584,297
Effective search space: 738249542
Effective search space used: 738249542
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)