BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0410700 Os03g0410700|J065061O12
         (56 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G72640.1  | chr1:27346409-27348147 REVERSE LENGTH=313           67   1e-12

>AT1G72640.1 | chr1:27346409-27348147 REVERSE LENGTH=313
          Length = 312

 Score = 67.4 bits (163), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/47 (68%), Positives = 36/47 (76%)

Query: 1   GAAAKGRMSKEDAATICVEALDSIPQTTLIFEVANGDEKVTDWKAWF 47
           GAAAKG +SKEDAA ICVEAL  IP T LIFEV NG+E V+DW+   
Sbjct: 255 GAAAKGSISKEDAARICVEALSVIPPTGLIFEVTNGEEVVSDWEGQL 301



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.312    0.124    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,102,099
Number of extensions: 28122
Number of successful extensions: 59
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 1
Length of query: 56
Length of database: 11,106,569
Length adjustment: 29
Effective length of query: 27
Effective length of database: 10,311,505
Effective search space: 278410635
Effective search space used: 278410635
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 104 (44.7 bits)