BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0410300 Os03g0410300|AK071843
         (114 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G06255.1  | chr2:2459336-2459665 FORWARD LENGTH=110            108   5e-25
AT1G17455.1  | chr1:5997932-5998276 FORWARD LENGTH=115            106   2e-24
AT1G72630.1  | chr1:27344988-27345347 FORWARD LENGTH=120          100   1e-22
AT2G29950.1  | chr2:12767790-12768167 FORWARD LENGTH=126           73   3e-14
AT2G40080.1  | chr2:16734545-16734880 REVERSE LENGTH=112           70   3e-13

>AT2G06255.1 | chr2:2459336-2459665 FORWARD LENGTH=110
          Length = 109

 Score =  108 bits (270), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 52/80 (65%), Positives = 63/80 (78%), Gaps = 4/80 (5%)

Query: 1  MDGDTLS----AAAAEDGKVLHAFQTSFVQVQSLLDQNRVLINEINQNHESKVPGDLSRN 56
          M+GDT+S    +    DGK+L  F+ SFVQVQ++LD NR+LINEINQNHESK+P +L RN
Sbjct: 1  MEGDTISRMMGSGVQMDGKILQTFEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGRN 60

Query: 57 VGLIRELNNNIRRVVDLYAD 76
          VGLIRELNNN+RRV  LY D
Sbjct: 61 VGLIRELNNNVRRVAHLYVD 80



>AT1G17455.1 | chr1:5997932-5998276 FORWARD LENGTH=115
          Length = 114

 Score =  106 bits (265), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/79 (67%), Positives = 60/79 (75%), Gaps = 3/79 (3%)

Query: 1  MDGDTLSAAAAE---DGKVLHAFQTSFVQVQSLLDQNRVLINEINQNHESKVPGDLSRNV 57
          M+GD LS        DGK+L +FQ SFV VQ +LDQNR+LINEINQNHESK P +L RNV
Sbjct: 1  MEGDVLSGFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNV 60

Query: 58 GLIRELNNNIRRVVDLYAD 76
          GLI+ELNNNIRRV  LY D
Sbjct: 61 GLIKELNNNIRRVASLYGD 79



>AT1G72630.1 | chr1:27344988-27345347 FORWARD LENGTH=120
          Length = 119

 Score =  100 bits (249), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 52/79 (65%), Positives = 56/79 (70%), Gaps = 3/79 (3%)

Query: 1  MDGDTLSAAAAE---DGKVLHAFQTSFVQVQSLLDQNRVLINEINQNHESKVPGDLSRNV 57
          M+GD  S        DGK+L  FQ SFVQVQ +LDQNR+LINEINQNHESK    L RNV
Sbjct: 5  MEGDVYSGFGERYQMDGKLLQNFQKSFVQVQDILDQNRLLINEINQNHESKQADHLGRNV 64

Query: 58 GLIRELNNNIRRVVDLYAD 76
          GLIRELNNNIR V  LY D
Sbjct: 65 GLIRELNNNIRTVASLYGD 83



>AT2G29950.1 | chr2:12767790-12768167 FORWARD LENGTH=126
          Length = 125

 Score = 73.2 bits (178), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/76 (47%), Positives = 54/76 (71%), Gaps = 1/76 (1%)

Query: 2  DGDTLSAAAA-EDGKVLHAFQTSFVQVQSLLDQNRVLINEINQNHESKVPGDLSRNVGLI 60
          DG+ ++A+AA ED +V       F + Q  LDQNR LI  +N+NH S++P ++SRNVGLI
Sbjct: 22 DGEDVAASAAVEDVEVWDTLSNGFKRAQLYLDQNRDLIQRVNENHMSRIPDNVSRNVGLI 81

Query: 61 RELNNNIRRVVDLYAD 76
           E+N NI +V+++Y+D
Sbjct: 82 NEINGNISQVMEIYSD 97



>AT2G40080.1 | chr2:16734545-16734880 REVERSE LENGTH=112
          Length = 111

 Score = 69.7 bits (169), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 49/69 (71%)

Query: 8  AAAAEDGKVLHAFQTSFVQVQSLLDQNRVLINEINQNHESKVPGDLSRNVGLIRELNNNI 67
          A   ED  +      +F QVQS+LD+NR LI ++N NH+S++  ++S+NV LI+ELN NI
Sbjct: 17 AEQGEDPAMWENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNMSKNVALIQELNGNI 76

Query: 68 RRVVDLYAD 76
           +VV++Y+D
Sbjct: 77 SKVVNMYSD 85



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.132    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,792,351
Number of extensions: 49664
Number of successful extensions: 122
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 5
Length of query: 114
Length of database: 11,106,569
Length adjustment: 83
Effective length of query: 31
Effective length of database: 8,831,041
Effective search space: 273762271
Effective search space used: 273762271
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 104 (44.7 bits)