BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0410100 Os03g0410100|J100063A16
         (73 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G15880.1  | chr4:9012769-9015797 FORWARD LENGTH=490             91   1e-19
AT3G06910.1  | chr3:2178905-2181188 REVERSE LENGTH=503             80   3e-16
AT4G00690.1  | chr4:281313-283129 FORWARD LENGTH=349               70   3e-13

>AT4G15880.1 | chr4:9012769-9015797 FORWARD LENGTH=490
          Length = 489

 Score = 90.5 bits (223), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/64 (64%), Positives = 47/64 (73%)

Query: 10  INDQAWSAWICLTLNFSFNRWDCGMFMLKFIDFHSRGIGLCFTQEHMDYFRKRTAKEILR 69
           I+  +W       L    N +DCGMFMLK+IDF SRG+GLCF+QEHM YFR RTAKEILR
Sbjct: 426 IDANSWDMEFVEDLPQQKNGYDCGMFMLKYIDFFSRGLGLCFSQEHMPYFRLRTAKEILR 485

Query: 70  LRAD 73
           LRAD
Sbjct: 486 LRAD 489



>AT3G06910.1 | chr3:2178905-2181188 REVERSE LENGTH=503
          Length = 502

 Score = 79.7 bits (195), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/66 (54%), Positives = 46/66 (69%)

Query: 8   VHINDQAWSAWICLTLNFSFNRWDCGMFMLKFIDFHSRGIGLCFTQEHMDYFRKRTAKEI 67
           V ++   W       L    N +DCGMFM+K+IDF+SRG+ LCFTQE M YFR RTAKEI
Sbjct: 437 VDLDVSRWRQEFVQDLPMQRNGFDCGMFMVKYIDFYSRGLDLCFTQEQMPYFRARTAKEI 496

Query: 68  LRLRAD 73
           L+L+A+
Sbjct: 497 LQLKAE 502



>AT4G00690.1 | chr4:281313-283129 FORWARD LENGTH=349
          Length = 348

 Score = 69.7 bits (169), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/53 (64%), Positives = 40/53 (75%), Gaps = 7/53 (13%)

Query: 28  NRWDCGMFMLKFIDFHSRGIGLCFTQ-------EHMDYFRKRTAKEILRLRAD 73
           N +DCGMFMLK+IDF+SRG+ L F+Q       + M YFR RTAKEILRLRAD
Sbjct: 296 NGYDCGMFMLKYIDFYSRGLSLQFSQVIRDVIKKDMPYFRLRTAKEILRLRAD 348



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.336    0.145    0.518 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,697,844
Number of extensions: 56064
Number of successful extensions: 157
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 3
Length of query: 73
Length of database: 11,106,569
Length adjustment: 45
Effective length of query: 28
Effective length of database: 9,872,849
Effective search space: 276439772
Effective search space used: 276439772
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 104 (44.7 bits)