BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0409400 Os03g0409400|Os03g0409400
(194 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G45550.1 | chr5:18462284-18464840 FORWARD LENGTH=216 308 2e-84
AT4G19045.1 | chr4:10438213-10439788 REVERSE LENGTH=216 301 1e-82
AT5G20440.1 | chr5:6908646-6909996 FORWARD LENGTH=217 229 9e-61
AT5G20430.1 | chr5:6904705-6905391 FORWARD LENGTH=123 130 5e-31
>AT5G45550.1 | chr5:18462284-18464840 FORWARD LENGTH=216
Length = 215
Score = 308 bits (788), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 139/191 (72%), Positives = 160/191 (83%), Gaps = 1/191 (0%)
Query: 1 MSLFGRSSRSQLTFRXXXXXXXXXXXXXXXXHIDATLGSGNLREAVRLPIGEDLNEWLAV 60
MSLFG R+Q TFR HIDATLGSGNLREAVRLP GED NEWLAV
Sbjct: 1 MSLFGLG-RNQKTFRPKKSAPSGSKGAQLRKHIDATLGSGNLREAVRLPPGEDANEWLAV 59
Query: 61 NTVDFFNQVNFLYGTLMEFCTSSTCPIMSAGPKYEYRWADGMKVKKPVQVSAPKYVEYLM 120
NTVDFFNQVN LYGTL EFCT CP M+AGPKYEYRWADG+++KKP++VSAPKYVEYLM
Sbjct: 60 NTVDFFNQVNLLYGTLTEFCTPDNCPTMTAGPKYEYRWADGVQIKKPIEVSAPKYVEYLM 119
Query: 121 DWVESQLDDEAIFPQKIGAPFPQNFREVIRTIFKRLFRVYSHMYHSHFQMILKLKEEAHL 180
DW+E+QLDDE +FPQ++GAPFPQNF++V++TIFKRLFRVY+H+YHSHFQ I+ LKEEAHL
Sbjct: 120 DWIETQLDDETLFPQRLGAPFPQNFKDVVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHL 179
Query: 181 STCFKHFVLFT 191
+TCFKHF+LFT
Sbjct: 180 NTCFKHFILFT 190
>AT4G19045.1 | chr4:10438213-10439788 REVERSE LENGTH=216
Length = 215
Score = 301 bits (772), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 138/191 (72%), Positives = 158/191 (82%), Gaps = 1/191 (0%)
Query: 1 MSLFGRSSRSQLTFRXXXXXXXXXXXXXXXXHIDATLGSGNLREAVRLPIGEDLNEWLAV 60
MSLFG R+Q TFR HIDATLGSGNLREAV+LP GEDLNEWLAV
Sbjct: 1 MSLFGLG-RNQKTFRPKKSAPSGTKGAELRKHIDATLGSGNLREAVKLPPGEDLNEWLAV 59
Query: 61 NTVDFFNQVNFLYGTLMEFCTSSTCPIMSAGPKYEYRWADGMKVKKPVQVSAPKYVEYLM 120
NTVDFFNQVN L+GTL EFCT C M+AGPKYEYRWADG+++KKP++VSAPKYVEYLM
Sbjct: 60 NTVDFFNQVNLLFGTLTEFCTPENCSTMTAGPKYEYRWADGVQIKKPIEVSAPKYVEYLM 119
Query: 121 DWVESQLDDEAIFPQKIGAPFPQNFREVIRTIFKRLFRVYSHMYHSHFQMILKLKEEAHL 180
DW+E+QLDDE IFPQK+GA FP NF+EV++TIFKRLFRVY+H+YHSHFQ I+ LKEEAHL
Sbjct: 120 DWIETQLDDETIFPQKLGAAFPPNFKEVVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHL 179
Query: 181 STCFKHFVLFT 191
+TCFKHF+LFT
Sbjct: 180 NTCFKHFILFT 190
>AT5G20440.1 | chr5:6908646-6909996 FORWARD LENGTH=217
Length = 216
Score = 229 bits (583), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 99/154 (64%), Positives = 127/154 (82%), Gaps = 1/154 (0%)
Query: 37 LGSGNLREAVRLPIGEDLNEWLAVNTVDFFNQVNFLYGTLMEFCTSSTCPIMSAGPKYEY 96
+ S NLREAVRLP G D+NEW A+NTVDFFNQ++ LY TL EFCT +TCP+M+AG +YEY
Sbjct: 38 IRSDNLREAVRLPQGVDINEWFAMNTVDFFNQISLLYATLEEFCTQTTCPVMNAG-RYEY 96
Query: 97 RWADGMKVKKPVQVSAPKYVEYLMDWVESQLDDEAIFPQKIGAPFPQNFREVIRTIFKRL 156
RWADG + KP VSAPKYVEYL+DWVE+++D+EAIFP+ G PFP NF + ++ I ++L
Sbjct: 97 RWADGTTITKPKTVSAPKYVEYLIDWVETEIDNEAIFPKNPGEPFPPNFEDFVKRILRKL 156
Query: 157 FRVYSHMYHSHFQMILKLKEEAHLSTCFKHFVLF 190
FRVY+H+Y+SHF I+ L E+AHL+TCFKHF+LF
Sbjct: 157 FRVYAHIYYSHFHEIVALNEQAHLNTCFKHFLLF 190
>AT5G20430.1 | chr5:6904705-6905391 FORWARD LENGTH=123
Length = 122
Score = 130 bits (326), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 79/104 (75%), Gaps = 6/104 (5%)
Query: 88 MSAGPKYEYRWADGMKVKKPVQVSAPKYVEYLMDWVESQLDDEAIFPQKIGAPFPQNFRE 147
M AG +YEYRWADG + VSAP+YVE LM+W+E+Q+D+E IFP+K G PFP NF +
Sbjct: 1 MKAG-RYEYRWADGTTM-----VSAPEYVELLMNWIETQIDNEHIFPKKTGEPFPPNFED 54
Query: 148 VIRTIFKRLFRVYSHMYHSHFQMILKLKEEAHLSTCFKHFVLFT 191
++ I ++LFRVY+H+YHSHF I+ L E+AHL+TCF ++LF
Sbjct: 55 FVKRILRKLFRVYAHIYHSHFPKIVTLNEQAHLNTCFHRYLLFV 98
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.326 0.138 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,814,343
Number of extensions: 142927
Number of successful extensions: 401
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 399
Number of HSP's successfully gapped: 4
Length of query: 194
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 101
Effective length of database: 8,556,881
Effective search space: 864244981
Effective search space used: 864244981
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 109 (46.6 bits)