BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0403600 Os03g0403600|AK064220
(416 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G08050.1 | chr1:2499088-2501311 REVERSE LENGTH=642 112 3e-25
AT5G60710.1 | chr5:24410953-24414849 REVERSE LENGTH=705 105 6e-23
AT3G54780.1 | chr3:20278985-20281429 FORWARD LENGTH=676 99 5e-21
AT2G38970.1 | chr2:16274135-16276651 FORWARD LENGTH=693 96 4e-20
>AT1G08050.1 | chr1:2499088-2501311 REVERSE LENGTH=642
Length = 641
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 99/332 (29%), Positives = 148/332 (44%), Gaps = 33/332 (9%)
Query: 22 TNIRAGLEIGLAVAAGRRLTAGRAVNVMLMSDGQQN----------RGDATRLDPGG--V 69
TNI GL+IG V GRR +ML+SDGQ N R D L P +
Sbjct: 279 TNIAEGLKIGARVIEGRRW-KNPVSGMMLLSDGQDNFTFSHAGVRLRTDYESLLPSSCRI 337
Query: 70 PVHTFGLGADHDPAVLQAIAGKSREGMFHYVADGVNLTAPFSQLLGGLLT--IIAQDLEL 127
P+HTFG G+DHD ++ I+ S G F ++ + F+Q +GGLL+ I+ Q +E+
Sbjct: 338 PIHTFGFGSDHDAELMHTISEVS-SGTFSFIETETVIQDAFAQCIGGLLSVVILEQVVEI 396
Query: 128 TVTRVDGEAAIKKVDAGTYPQAAAADGSSVTVQFGTLYSAEVRRVLVYLALEDSTAFPPY 187
G I + AG+Y A D + T+ G +Y+ E R LV L + P
Sbjct: 397 ECIHEQG-LKISSIKAGSYRSRIAPDARTATIDVGDMYAEEERDFLVLLEI------PCC 449
Query: 188 DAEVVEAQFRYSLQGATVASNPDPVSIRRSGSAPEPSEEAPAR-------KPEVETEMAR 240
D E++ L+ V +P I S E S + P + EV+ ++ R
Sbjct: 450 DNGSGESESLSLLKVRCVYKDPVTKEIVHVESG-ELSIQRPMKLTGKEVVSIEVDRQLNR 508
Query: 241 RRHAESIREARSMADGKELERARTRLVEAQNALEDV--LDQANPMVDXXXXXXXXXXXXX 298
++++ EAR +ADG +L A L + L + ++ +
Sbjct: 509 FLVSQAMSEARVLADGGDLSGAVGILRNRERELSETPSAQSSDRLCQSLSSELSALQERM 568
Query: 299 XXXXAYERAGRAYAVSSLASHDRQRFAARGDA 330
Y +GRAYA SS++SH QR ARGD+
Sbjct: 569 TSRRMYRTSGRAYAFSSMSSHSAQRATARGDS 600
>AT5G60710.1 | chr5:24410953-24414849 REVERSE LENGTH=705
Length = 704
Score = 105 bits (261), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 100/335 (29%), Positives = 153/335 (45%), Gaps = 40/335 (11%)
Query: 22 TNIRAGLEIGLAVAAGRRLTAGRAVNVMLMSDGQQ---------NRG-DATRLDP----- 66
TNI GL+ G V RR +++L+SDGQ +RG D L P
Sbjct: 327 TNIAEGLKKGARVLIDRRF-KNPVSSIVLLSDGQDTYTMTSPNGSRGTDYKALLPKEING 385
Query: 67 GGVPVHTFGLGADHDPAVLQAIAGKSREGMFHYVADGVNLTAPFSQLLGGLLTIIAQDLE 126
+PVH FG GADHD +++ +IA S G F ++ + F+Q +GGLL+++ Q+L
Sbjct: 386 NRIPVHAFGFGADHDASLMHSIAENS-GGTFSFIESETVIQDAFAQCIGGLLSVVVQELC 444
Query: 127 LTVTRVDGEAAIKKVDAGTYPQAAAADGSSVTVQFGTLYSAEVRRVLVYLALEDSTAFPP 186
+T+ + I V AG+Y + + ++ G LY+ E R LV L
Sbjct: 445 VTIECMHHLLRIGSVKAGSYRFDNGPNSRTGSIAVGDLYAEEERNFLVNL---------- 494
Query: 187 YDAEVVE--AQFRYSLQGATVASNP---DPVSIRRSGSAP--EP---SEEAPARKPEVET 236
D +V+ + L+ V +P + V++ SG P +E P EV+
Sbjct: 495 -DIPIVDGVSDVMSLLKVQCVYKDPVTKETVNLNNSGEVKILRPIVMTERRPVVSVEVDR 553
Query: 237 EMARRRHAESIREARSMADGKELERARTRLVEAQNAL-EDVLDQA-NPMVDXXXXXXXXX 294
+ R R AE+I EAR +A+ +L A + L + L E V +A + +
Sbjct: 554 QRIRLRAAEAISEARVLAERGDLTEAVSVLETCRGLLTESVSGRAGDQLCVTLCAELKEM 613
Query: 295 XXXXXXXXAYERAGRAYAVSSLASHDRQRFAARGD 329
YE +GRAY ++ L+SH QR ARGD
Sbjct: 614 QERMASRQVYEASGRAYVLAGLSSHSWQRATARGD 648
>AT3G54780.1 | chr3:20278985-20281429 FORWARD LENGTH=676
Length = 675
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 95/343 (27%), Positives = 151/343 (44%), Gaps = 28/343 (8%)
Query: 22 TNIRAGLEIGLAVAAGRRLTAGRAVNVMLMSDGQ----QNRGDAT-RLDPGGVPVHTFGL 76
TNI GL G V R L +++L+SDG+ N D + ++ + VH+FG
Sbjct: 318 TNIVDGLRKGAKVMEDR-LERNSVASIILLSDGRDTYTTNHPDPSYKVMLPQISVHSFGF 376
Query: 77 GADHDPAVLQAIAGKSREGMFHYVADGVNLTAPFSQLLGGLLTIIAQDLELTVTRVDGEA 136
G+DHD +V+ +++ S G F ++ + +Q +GGLL++ Q+L + + V
Sbjct: 377 GSDHDASVMHSVSEVS-GGTFSFIESESVIQDALAQCIGGLLSVAVQELRVEIEGVSPNV 435
Query: 137 AIKKVDAGTYPQAAAADGSSVTVQFGTLYSAEVRRVLVYLAL--EDSTAFPPYDAEVVEA 194
+ + AG+Y DG S V G LY+ E R LV + + E+ P +
Sbjct: 436 RLSSIKAGSYSSLVTGDGHSGLVDLGDLYADEERDFLVSINIPVEEDGHTPLLKLRCL-- 493
Query: 195 QFRYSLQGATVASNPDPVSIRRSGSAPEPSEEAPARKPEVETEMARRRHAESIREARSMA 254
+ L + IRR PE E EV + R AE++ +AR++A
Sbjct: 494 -YINPLTKEITTLESHVLQIRR----PEYVAEEKVVPIEVVRQRNRFLAAEAMAQARTLA 548
Query: 255 DGKELERA-----RTRLVEAQNALEDVLDQANPMVDXXXXXXXXXXXXXXXXXAYERAGR 309
+ +LE A RLV A+ D+ +D YE +GR
Sbjct: 549 EHGDLEAAVKAIENFRLVLAETVAAKSCDRFCVALDSELKEMQGRMRSSHM---YEASGR 605
Query: 310 AYAVSSLASHDRQRFAARGDAEG----VRLFATPRMDAYLEQA 348
AY +S L+SH QR ARG++ V+ + TP M L ++
Sbjct: 606 AYILSGLSSHSWQRATARGNSRDSSSFVQAYQTPSMAEMLRRS 648
>AT2G38970.1 | chr2:16274135-16276651 FORWARD LENGTH=693
Length = 692
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 85/330 (25%), Positives = 147/330 (44%), Gaps = 30/330 (9%)
Query: 22 TNIRAGLEIGLAVAAGRRLTAGRAVNVMLMSDGQ----QNRGDATR-----LDPGG---- 68
TNI GL G+ V RR +++L+SDG+ N+ D L G
Sbjct: 328 TNIAEGLRKGVKVMEDRR-DKNPVASIILLSDGRDTYTMNQADPNYKLLLPLSMHGCESK 386
Query: 69 ---VPVHTFGLGADHDPAVLQAIAGKSREGMFHYVADGVNLTAPFSQLLGGLLTIIAQDL 125
+PVH+FG G+DHD +++ +++ S G F ++ + +Q +GGLL++ Q+L
Sbjct: 387 RFQIPVHSFGFGSDHDASLMHSVSETS-GGTFSFIESESVIQDALAQCIGGLLSVAVQEL 445
Query: 126 ELTVTRVDGEAAIKKVDAGTYPQAAAADGSSVTVQFGTLYSAEVRRVLVYLAL---EDST 182
L + + + + + AG+Y + DG S V G LY+ E R L+ + + +D
Sbjct: 446 RLEIEGMCSDVHLSSIKAGSYQSLVSGDGRSGCVDIGDLYADEERDFLISVNIPPQKDGN 505
Query: 183 AFPPYDAEVVEAQFRYSLQGATVASNPDPVSIRRSGSAPEPSEEAPARKPEVETEMARRR 242
P V ++ L V + I+R PE + EV+ + R
Sbjct: 506 ETPLLKMRCV---YKDLLTKEIVTLQSHMLKIQR----PETVGQEVVVSIEVDRQRNRFL 558
Query: 243 HAESIREARSMADGKELERARTRLVEAQNALEDVLD--QANPMVDXXXXXXXXXXXXXXX 300
AE++ +AR++A+ ++L T + + AL + + +
Sbjct: 559 AAEAMVKARALAEREDLAAGVTAIQNFRVALAETVSAKSGDGFCVALDRELKEMQERMAS 618
Query: 301 XXAYERAGRAYAVSSLASHDRQRFAARGDA 330
YE +GRAY +S L+SH QR +RG++
Sbjct: 619 RHVYEVSGRAYILSGLSSHSWQRATSRGES 648
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.131 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,236,201
Number of extensions: 287706
Number of successful extensions: 840
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 828
Number of HSP's successfully gapped: 4
Length of query: 416
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 315
Effective length of database: 8,337,553
Effective search space: 2626329195
Effective search space used: 2626329195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)