BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0402800 Os03g0402800|AK061842
(228 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G74950.1 | chr1:28148919-28150258 REVERSE LENGTH=250 115 1e-26
AT1G19180.1 | chr1:6622312-6623271 FORWARD LENGTH=254 102 2e-22
AT1G72450.1 | chr1:27274336-27276136 REVERSE LENGTH=270 84 5e-17
AT1G17380.1 | chr1:5955654-5957070 REVERSE LENGTH=275 82 3e-16
AT5G20900.1 | chr5:7090883-7092201 FORWARD LENGTH=188 74 4e-14
AT3G43440.1 | chr3:15367670-15369774 FORWARD LENGTH=239 59 3e-09
AT1G70700.1 | chr1:26654951-26656804 FORWARD LENGTH=268 51 6e-07
AT4G14713.1 | chr4:8427084-8429525 REVERSE LENGTH=314 51 6e-07
AT4G14720.1 | chr4:8432452-8434934 REVERSE LENGTH=316 49 2e-06
>AT1G74950.1 | chr1:28148919-28150258 REVERSE LENGTH=250
Length = 249
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 112/220 (50%), Gaps = 50/220 (22%)
Query: 13 SFAMACSLLSRYVRQNGAAAGELGLGIRGEADANKGKE---TMELFP-QNSGFGSEAA-- 66
SF+ C+ LSRY+++ G+ G+L LG+ + D N G M LFP + SG S A
Sbjct: 17 SFSQTCTRLSRYLKEKGSF-GDLSLGMTCKPDVNGGSRQPTMMNLFPCEASGMDSSAGQE 75
Query: 67 ---------------------------AVKETPDAREQEKRQ--LTIFYGGKVLVFDDFP 97
+KET + + E + LTIFYGG+V+VFDDF
Sbjct: 76 DIKPKTMFPRQSSFSSSSSSGTKEDVQMIKETTKSVKPESQSAPLTIFYGGRVMVFDDFS 135
Query: 98 AEKAKDLMQMASKSSSTAQNCVLLPSSATATVADN----TKXXXXXXXXXXXXXXXXXXX 153
AEKAK+++ +A+K S+ + C TA V +N ++
Sbjct: 136 AEKAKEVIDLANKGSAKSFTCF------TAEVNNNHSAYSQKEIASSPNPVCSPAKTAAQ 189
Query: 154 KPVRPN----AADLPQARKASLHRFLEKRKDRLQAKAPYQ 189
+P++PN A +LP AR+ASLHRFLEKRKDR+ +KAPYQ
Sbjct: 190 EPIQPNPASLACELPIARRASLHRFLEKRKDRITSKAPYQ 229
>AT1G19180.1 | chr1:6622312-6623271 FORWARD LENGTH=254
Length = 253
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 121/246 (49%), Gaps = 57/246 (23%)
Query: 13 SFAMACSLLSRYVRQNGAAAGELGLGIRGEADAN-------KGKETMELFP-QNSGFGSE 64
SF+ CS LS+Y+++NG+ G+L LG+ + D N + TM LFP + S S
Sbjct: 22 SFSQTCSRLSQYLKENGSF-GDLSLGMACKPDVNGTLGNSRQPTTTMSLFPCEASNMDSM 80
Query: 65 AAAVKET------PDAR-----------------------EQEKRQLTIFYGGKVLVFDD 95
VK T P E + LTIFY G+V+VF+D
Sbjct: 81 VQDVKPTNLFPRQPSFSSSSSSLPKEDVLKMTQTTRSVKPESQTAPLTIFYAGQVIVFND 140
Query: 96 FPAEKAKDLMQMASK--SSSTAQNCVLLPSSATATVADNTKXXXXXXXXXXXXXXXXXXX 153
F AEKAK+++ +ASK ++S A+N + S AT+A+
Sbjct: 141 FSAEKAKEVINLASKGTANSLAKNQTDI-RSNIATIANQVPHPRKTTTQ----------- 188
Query: 154 KPVRPNAA---DLPQARKASLHRFLEKRKDRLQAKAPYQ-GSPSDASPVKKELQESQPWL 209
+P++ + +LP AR+ASLHRFLEKRKDR+ +KAPYQ P+ AS + + WL
Sbjct: 189 EPIQSSPTPLTELPIARRASLHRFLEKRKDRVTSKAPYQLCDPAKAS-SNPQTTGNMSWL 247
Query: 210 GLGPQV 215
GL ++
Sbjct: 248 GLAAEI 253
>AT1G72450.1 | chr1:27274336-27276136 REVERSE LENGTH=270
Length = 269
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 106/230 (46%), Gaps = 61/230 (26%)
Query: 1 MASAKSGERGSSSFAMACSLLSRYVRQNGAAAGELGLGI--------------RGEADAN 46
M++ ++ E+ S+F+ CSLLSRY+++ G+ G + +G+ +G+ +
Sbjct: 1 MSTGQAPEK--SNFSQRCSLLSRYLKEKGSF-GNINMGLARKSDLELAGKFDLKGQQNVI 57
Query: 47 KGKETMELFP----QNSGFGSEAAAVKE----------TPDAREQEKRQLTIFYGGKVLV 92
K ET E P Q G + + ++ A E QLTIF+GGKV+V
Sbjct: 58 KKVETSETRPFKLIQKFSIGEASTSTEDKAIYIDLSEPAKVAPESGNSQLTIFFGGKVMV 117
Query: 93 FDDFPAEKAKDLMQMA---------SKSSSTAQNC----VLLPSSATATVADNTKXXXXX 139
F++FP +KAK++M++A SK+S + N V++P T + N +
Sbjct: 118 FNEFPEDKAKEIMEVAKEANHVAVDSKNSQSHMNLDKSNVVIPDLNEPTSSGNNEDQETG 177
Query: 140 XXXXXXXXXXXXXXKPVRPNAADLPQARKASLHRFLEKRKDRLQAKAPYQ 189
AR+ASLHRF KRKDR A+APYQ
Sbjct: 178 QQHQVVERI-----------------ARRASLHRFFAKRKDRAVARAPYQ 210
>AT1G17380.1 | chr1:5955654-5957070 REVERSE LENGTH=275
Length = 274
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 102/214 (47%), Gaps = 18/214 (8%)
Query: 12 SSFAMACSLLSRYVRQNGAAAGELGLGIRGEADAN---------KGKET-MELFPQNSGF 61
S F CSLLSRY+++ G+ G + LG+ + D++ GK+ M + G
Sbjct: 16 SDFTRRCSLLSRYLKEKGSF-GNIDLGLYRKPDSSLALPGKFDPPGKQNAMHKAGHSKGE 74
Query: 62 GSEAAA--VKETPDAREQE--KRQLTIFYGGKVLVFDDFPAEKAKDLMQMASKSSSTAQN 117
S ++ VK+ D E + QLTIF+GGKVLV+++FP +KAK++M++A ++ +
Sbjct: 75 PSTSSGGKVKDVADLSESQPGSSQLTIFFGGKVLVYNEFPVDKAKEIMEVAKQAKPVTEI 134
Query: 118 CVLLPSSATATVADNTKXXXXXXXXXXXXXXXXXXXKPVRPNAADLPQARKASLHRFLEK 177
+ P + ++ + N AR+ASLHRF K
Sbjct: 135 NIQTPINDENNNNKSSMVLPDLNEPTDNNHLTKEQQQQQEQNQIVERIARRASLHRFFAK 194
Query: 178 RKDRLQAKAPY---QGSPSDASPVKKELQESQPW 208
RKDR A+APY Q + P K E+ QP
Sbjct: 195 RKDRAVARAPYQVNQNAGHHRYPPKPEIVTGQPL 228
>AT5G20900.1 | chr5:7090883-7092201 FORWARD LENGTH=188
Length = 187
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 61/116 (52%), Gaps = 11/116 (9%)
Query: 81 QLTIFYGGKVLVFDDFPAEKAKDLMQMASKSSSTAQNCVLLPSSATATVADNTKXXXXXX 140
QLTIF+GG V VFD P+EK ++++++A+K+ T + + P S+ A
Sbjct: 57 QLTIFFGGSVTVFDGLPSEKVQEILRIAAKAMETKNSTSISPVSSPAL------NRAPSF 110
Query: 141 XXXXXXXXXXXXXKPVRP-----NAADLPQARKASLHRFLEKRKDRLQAKAPYQGS 191
P++P + ADLP AR+ SL RFLEKR+DRL K PY S
Sbjct: 111 SSTSNVASPAAQPFPIQPISFCRSTADLPIARRHSLQRFLEKRRDRLVNKNPYPTS 166
>AT3G43440.1 | chr3:15367670-15369774 FORWARD LENGTH=239
Length = 238
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 55/126 (43%), Gaps = 21/126 (16%)
Query: 72 PDAREQEKRQLTIFYGGKVLVFDDFPAEKAKDLMQMAS--KSSSTAQNCVLLPSSATATV 129
PD QLTI +GG VFD PAEK ++++ +A+ K++ T + P+ A
Sbjct: 122 PDGSMILPSQLTIIFGGSFSVFDGIPAEKVQEILHIAAAAKATETINLTSINPALKRAIS 181
Query: 130 ADNTKXXXXXXXXXXXXXXXXXXXKPVRPNAADLPQARKASLHRFLEKRKDRLQAKAPYQ 189
N + AD+P AR+ SL RF EKR+ R PY
Sbjct: 182 FSNASTVACV-------------------STADVPIARRRSLQRFFEKRRHRFVHTKPYS 222
Query: 190 GSPSDA 195
+ S+A
Sbjct: 223 ATTSEA 228
>AT1G70700.1 | chr1:26654951-26656804 FORWARD LENGTH=268
Length = 267
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 51/127 (40%), Gaps = 18/127 (14%)
Query: 81 QLTIFYGGKVLVFDDFPAEKAKDLMQMASKS------------------SSTAQNCVLLP 122
QLTIFYGG + VF+D +KA+ +M A N
Sbjct: 119 QLTIFYGGTISVFNDISPDKAQAIMLCAGNGLKGETGDSKPVREAERMYGKQIHNTAATS 178
Query: 123 SSATATVADNTKXXXXXXXXXXXXXXXXXXXKPVRPNAADLPQARKASLHRFLEKRKDRL 182
SS+ + ++ R +PQARKASL RFLEKRK+RL
Sbjct: 179 SSSATHTDNFSRCRDTPVAATNAMSMIESFNAAPRNMIPSVPQARKASLARFLEKRKERL 238
Query: 183 QAKAPYQ 189
+ PY+
Sbjct: 239 MSAMPYK 245
>AT4G14713.1 | chr4:8427084-8429525 REVERSE LENGTH=314
Length = 313
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 46/106 (43%), Gaps = 7/106 (6%)
Query: 81 QLTIFYGGKVLVFDDFPAEKAKDLMQMASKSSSTAQNCVLLPSSATATVADNTKXXXXXX 140
Q+TIFY GKV V+D P EKA+ +M A+ +N + S + + K
Sbjct: 156 QMTIFYSGKVNVYDGIPPEKARSIMHFAANPIDLPENGIFASSRMISKLISKEKMMELPQ 215
Query: 141 XXXXXXXXXXXXXKPVRPNAADLPQARKASLHRFLEKRKDRLQAKA 186
R + + RK SL R+ EKRKDR +KA
Sbjct: 216 KGLEKANSS-------RDSGMEGQANRKVSLQRYREKRKDRKFSKA 254
>AT4G14720.1 | chr4:8432452-8434934 REVERSE LENGTH=316
Length = 315
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 43/101 (42%), Gaps = 7/101 (6%)
Query: 81 QLTIFYGGKVLVFDDFPAEKAKDLMQMASKSSSTAQNCVLLPSSATATVADNTKXXXXXX 140
Q+TIFY GKV V+D P EKA+ +M A+ +N + S + K
Sbjct: 157 QMTIFYSGKVNVYDGVPPEKARSIMHFAANPIDLPENGIFASSRMISKPMSKEKMVELPQ 216
Query: 141 XXXXXXXXXXXXXKPVRPNAADLPQARKASLHRFLEKRKDR 181
R + + RK SL R+LEKRKDR
Sbjct: 217 YGLEKAPAS-------RDSDVEGQANRKVSLQRYLEKRKDR 250
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.309 0.124 0.342
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,199,047
Number of extensions: 155519
Number of successful extensions: 400
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 390
Number of HSP's successfully gapped: 9
Length of query: 228
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 133
Effective length of database: 8,502,049
Effective search space: 1130772517
Effective search space used: 1130772517
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 110 (47.0 bits)