BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0390900 Os03g0390900|AK068299
         (87 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G22790.1  | chr5:7599395-7601573 REVERSE LENGTH=434            119   4e-28
AT2G37860.3  | chr2:15856952-15858793 FORWARD LENGTH=433          114   9e-27

>AT5G22790.1 | chr5:7599395-7601573 REVERSE LENGTH=434
          Length = 433

 Score =  119 bits (297), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 59/90 (65%), Positives = 69/90 (76%), Gaps = 7/90 (7%)

Query: 3   RGVSLPADM-EAAKDAGIWEVLLLRYFDLQAAPWPLAAMIRAFSMLHNRMLADPSFLFKV 61
           RG++LP DM EAAK  GI ++ LLRY DLQ + WPL  ++R+ +ML NRMLADPSFLFKV
Sbjct: 161 RGITLPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLMRSCAMLRNRMLADPSFLFKV 220

Query: 62  GTEVVIDSRCATFA------EDFWAEFELY 85
           GTEV IDS CATFA      EDFW+EFELY
Sbjct: 221 GTEVAIDSCCATFAEVQKRGEDFWSEFELY 250



>AT2G37860.3 | chr2:15856952-15858793 FORWARD LENGTH=433
          Length = 432

 Score =  114 bits (285), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 59/91 (64%), Positives = 70/91 (76%), Gaps = 7/91 (7%)

Query: 2   ARGVSLPADM-EAAKDAGIWEVLLLRYFDLQAAPWPLAAMIRAFSMLHNRMLADPSFLFK 60
           ARG +LP+DM EAAK+ GI +VLLLRY DLQ++   L   IR+++ML NRMLADPSFLFK
Sbjct: 160 ARGATLPSDMLEAAKNYGIRKVLLLRYLDLQSSAGLLGFAIRSWAMLRNRMLADPSFLFK 219

Query: 61  VGTEVVIDSRCATFAE------DFWAEFELY 85
           +G E+VIDS CAT AE      DFWAEFELY
Sbjct: 220 IGAEIVIDSCCATVAEVQKRGKDFWAEFELY 250



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.327    0.138    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,710,730
Number of extensions: 50664
Number of successful extensions: 165
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 2
Length of query: 87
Length of database: 11,106,569
Length adjustment: 58
Effective length of query: 29
Effective length of database: 9,516,441
Effective search space: 275976789
Effective search space used: 275976789
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 104 (44.7 bits)