BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0390400 Os03g0390400|AB025187
(169 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G22450.1 | chr1:7925447-7926918 FORWARD LENGTH=192 155 1e-38
AT4G28060.1 | chr4:13944018-13945602 REVERSE LENGTH=79 137 2e-33
AT5G57815.1 | chr5:23426753-23427637 FORWARD LENGTH=79 134 3e-32
AT1G32710.1 | chr1:11833113-11833706 FORWARD LENGTH=135 70 7e-13
>AT1G22450.1 | chr1:7925447-7926918 FORWARD LENGTH=192
Length = 191
Score = 155 bits (392), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 64/68 (94%), Positives = 67/68 (98%)
Query: 102 PADFRFPTTNQTRHCFTRYVEYHRCVAAKGEDAPECDKFAKYYRSLCPGEWVERWNEQRE 161
PADFRFPTTNQTRHCFTRYVEYHRCVAAKG+DAPECDKFAK+YRSLCP EWV+RWNEQRE
Sbjct: 123 PADFRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECDKFAKFYRSLCPSEWVDRWNEQRE 182
Query: 162 NGTFPGPL 169
NGTFPGPL
Sbjct: 183 NGTFPGPL 190
>AT4G28060.1 | chr4:13944018-13945602 REVERSE LENGTH=79
Length = 78
Score = 137 bits (346), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 57/68 (83%), Positives = 64/68 (94%)
Query: 102 PADFRFPTTNQTRHCFTRYVEYHRCVAAKGEDAPECDKFAKYYRSLCPGEWVERWNEQRE 161
PADFRFPTTNQTRHCFTRY+E+HRC AKGEDA EC++FAKYYR+LCPGEWV++WNEQRE
Sbjct: 11 PADFRFPTTNQTRHCFTRYIEFHRCTTAKGEDANECERFAKYYRALCPGEWVDKWNEQRE 70
Query: 162 NGTFPGPL 169
GTFPGPL
Sbjct: 71 TGTFPGPL 78
>AT5G57815.1 | chr5:23426753-23427637 FORWARD LENGTH=79
Length = 78
Score = 134 bits (336), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 54/68 (79%), Positives = 65/68 (95%)
Query: 102 PADFRFPTTNQTRHCFTRYVEYHRCVAAKGEDAPECDKFAKYYRSLCPGEWVERWNEQRE 161
PADFRFPTTNQTRHCFTRY+E+HRC AKGE++ +C++FAKYYR+LCPGEWV++WNEQRE
Sbjct: 11 PADFRFPTTNQTRHCFTRYIEFHRCTTAKGEESNDCERFAKYYRALCPGEWVDKWNEQRE 70
Query: 162 NGTFPGPL 169
+GTFPGPL
Sbjct: 71 SGTFPGPL 78
>AT1G32710.1 | chr1:11833113-11833706 FORWARD LENGTH=135
Length = 134
Score = 69.7 bits (169), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 106 RFPTTNQTRHCFTRYVEYHRCVAAKGEDAPECDKFAKYYRSLCPGEWVER 155
RFP TN+TRHCF R+++YH+C+ G DA +C+ Y RS+CP E V +
Sbjct: 64 RFPVTNETRHCFNRFMQYHKCIEKNGRDANDCNNLRDYVRSICPEELVSK 113
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.308 0.125 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,419,917
Number of extensions: 118802
Number of successful extensions: 491
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 490
Number of HSP's successfully gapped: 4
Length of query: 169
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 78
Effective length of database: 8,611,713
Effective search space: 671713614
Effective search space used: 671713614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 108 (46.2 bits)