BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0389100 Os03g0389100|AK063170
(302 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G25110.1 | chr4:12887738-12889953 REVERSE LENGTH=419 245 2e-65
AT1G02170.1 | chr1:411883-413426 FORWARD LENGTH=368 232 2e-61
AT5G64240.2 | chr5:25695836-25697249 FORWARD LENGTH=363 220 6e-58
AT1G79310.1 | chr1:29833986-29835412 FORWARD LENGTH=404 89 2e-18
AT1G79340.1 | chr1:29842849-29844368 FORWARD LENGTH=419 87 2e-17
AT1G79320.1 | chr1:29836686-29837908 FORWARD LENGTH=369 87 2e-17
AT1G79330.1 | chr1:29838722-29840137 FORWARD LENGTH=411 84 1e-16
AT5G04200.1 | chr5:1153893-1154870 FORWARD LENGTH=326 75 4e-14
AT1G16420.1 | chr1:5612304-5613829 REVERSE LENGTH=382 72 5e-13
>AT4G25110.1 | chr4:12887738-12889953 REVERSE LENGTH=419
Length = 418
Score = 245 bits (625), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 143/319 (44%), Positives = 184/319 (57%), Gaps = 32/319 (10%)
Query: 4 VSGGKRALLVGVSYKGDTSRELTGAAEDVKNMN-SLLKKFLFPEESIHMLTEELGAKDPL 62
V G KRA++VGVSYK +T EL G D M L+K+F FPE I MLTEE DP+
Sbjct: 112 VHGQKRAVIVGVSYK-NTKDELKGCINDANCMKFMLMKRFQFPESCILMLTEE--EADPM 168
Query: 63 KAPTRENIMKEMRWLVEGCRAGDSLVFHFSGHGRQRKDDNGDEVDGRDEELCPVDYKVSG 122
+ PT+ NI M WLV C+ GDSLVFHFSGHG + DDNGDEVDG DE L PVD++ SG
Sbjct: 169 RWPTKNNITMAMHWLVLSCKPGDSLVFHFSGHGNNQMDDNGDEVDGFDETLLPVDHRTSG 228
Query: 123 NILDDDINDAIVKPLTQGVKLHAIIDTCHSGTMLDLPYLCRFNRMGLCSRYKWVGQTRWR 182
I+DD+IN IV+PL GVKLHAI+D CHSGT++DLPYLCR +R+G Y+W
Sbjct: 229 VIVDDEINATIVRPLPYGVKLHAIVDACHSGTVMDLPYLCRMDRLG---NYEWEDH---- 281
Query: 183 LSPKKEWAMVPVGGHAISISGCKDYQNSLEPDNTAGG---GVMTWSFLEAVGSRRTMTYG 239
PK GG S +GC D Q S + +G G MT++F++A+ MTYG
Sbjct: 282 -RPKTGMWKGTSGGEVFSFTGCDDDQTSADTPQLSGSAWTGAMTYAFIQAIERGHGMTYG 340
Query: 240 ELLDSMRAKVHHRLQQSSSGKCLV----------------TGCLGSLAAKCLPCCFLSVQ 283
LL++MR+ VH + + G+ LV G + + Q
Sbjct: 341 SLLNAMRSTVHEIFDK-NKGRELVEVGGADFLSTLLGLLILGASPPDEEEEVNQAPQKTQ 399
Query: 284 EPQLCSSKEFNVYEEQFIL 302
EPQL +++ F VYE+ F L
Sbjct: 400 EPQLSANEAFAVYEKPFSL 418
>AT1G02170.1 | chr1:411883-413426 FORWARD LENGTH=368
Length = 367
Score = 232 bits (591), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 137/302 (45%), Positives = 179/302 (59%), Gaps = 17/302 (5%)
Query: 6 GGKRALLVGVSYKGDTSRELTGAAEDVKNMNSLL-KKFLFPEESIHMLTEELGAKDPLKA 64
G KRA++ G+SY+ + EL G D K M LL KF F +SI MLTEE DP +
Sbjct: 78 GRKRAVICGISYRF-SRHELKGCINDAKCMRHLLINKFKFSPDSILMLTEE--ETDPYRI 134
Query: 65 PTRENIMKEMRWLVEGCRAGDSLVFHFSGHGRQRKDDNGDEVDGRDEELCPVDYKVSGNI 124
PT++N+ + WLV+GC AGDSLVFH+SGHG ++++ NGDEVDG DE LCP+D++ G I
Sbjct: 135 PTKQNMRMALYWLVQGCTAGDSLVFHYSGHGSRQRNYNGDEVDGYDETLCPLDFETQGMI 194
Query: 125 LDDDINDAIVKPLTQGVKLHAIIDTCHSGTMLDLPYLCRFNRMGLCSRYKWVGQTRWRLS 184
+DD+IN IV+PL GVKLH+IID CHSGT+LDLP+LCR NR G +Y W
Sbjct: 195 VDDEINATIVRPLPHGVKLHSIIDACHSGTVLDLPFLCRMNRAG---QYVWEDH-----R 246
Query: 185 PKKEWAMVPVGGHAISISGCKDYQNSLEP---DNTAGGGVMTWSFLEAVG-SRRTMTYGE 240
P+ GG AISISGC D Q S + G MT+ F++A+ S + TYG
Sbjct: 247 PRSGLWKGTAGGEAISISGCDDDQTSADTSALSKITSTGAMTFCFIQAIERSAQGTTYGS 306
Query: 241 LLDSMRAKVHHRLQQSSSGKCLVTGCLGSLAAKCLPCCFLSVQEPQLCSSKEFNVYEEQF 300
LL+SMR + + +VT L L L QEPQL + + F+VY + F
Sbjct: 307 LLNSMRTTIRNTGNDGGGSGGVVTTVLSMLLTGGSAIGGLR-QEPQLTACQTFDVYAKPF 365
Query: 301 IL 302
L
Sbjct: 366 TL 367
>AT5G64240.2 | chr5:25695836-25697249 FORWARD LENGTH=363
Length = 362
Score = 220 bits (561), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 134/301 (44%), Positives = 177/301 (58%), Gaps = 30/301 (9%)
Query: 6 GGKRALLVGVSYKGDTSRELTGAAEDVKNMNSLL-KKFLFPEESIHMLTEELGAKDPLKA 64
G KRA+L GV+YKG S L G D K+M SLL ++ FP +SI MLTE+ + P +
Sbjct: 88 GKKRAVLCGVNYKG-KSYSLKGCISDAKSMRSLLVQQMGFPIDSILMLTEDEAS--PQRI 144
Query: 65 PTRENIMKEMRWLVEGCRAGDSLVFHFSGHGRQRKDDNGDEVDGRDEELCPVDYKVSGNI 124
PT+ NI K MRWLVEG RA DSLVFHFSGHG Q+ D NGDE+DG+DE LCP+D++ G I
Sbjct: 145 PTKRNIRKAMRWLVEGNRARDSLVFHFSGHGSQQNDYNGDEIDGQDEALCPLDHETEGKI 204
Query: 125 LDDDINDAIVKPLTQGVKLHAIIDTCHSGTMLDLPYLCRFNRMGLCSRYKWVGQTRWRLS 184
+DD+IN +V+PL G KLHA+ID C+SGT+LDLP++CR R G Y+W R
Sbjct: 205 IDDEINRILVRPLVHGAKLHAVIDACNSGTVLDLPFICRMERNG---SYEWEDHRSVRAY 261
Query: 185 PKKEWAMVPVGGHAISISGCKDYQNS-LEPDNTA-GGGVMTWSFLEAVGSRRTM-TYGEL 241
+ GG A S C D ++S P T G MT+SF++AV + TYG L
Sbjct: 262 KGTD------GGAAFCFSACDDDESSGYTPVFTGKNTGAMTYSFIKAVKTAGPAPTYGHL 315
Query: 242 LDSMRAKVHHRLQQSSSGKCLVTGCLGSLAAKCLPCCFLSVQEPQLCSSKEFNVYEEQFI 301
L+ M + + + + + G S A EP L SS+EF+VY +F+
Sbjct: 316 LNLMCSAI-----REAQSRLAFNGDYTSSDASA---------EPLLTSSEEFDVYATKFV 361
Query: 302 L 302
L
Sbjct: 362 L 362
>AT1G79310.1 | chr1:29833986-29835412 FORWARD LENGTH=404
Length = 403
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 88/153 (57%), Gaps = 10/153 (6%)
Query: 7 GKRALLVGVSYKGDTSRELTGAAEDVKNMNS-LLKKFLFPEESIHMLTEELGAKDPLKAP 65
KRALL+G++Y G T+ EL G DV M+ L+ +F F EE I +L + + P
Sbjct: 2 AKRALLIGINYPG-TTEELQGCVNDVHRMHKCLVDRFGFAEEDITVL---IDTDESYTQP 57
Query: 66 TRENIMKEMRWLVEGCRAGDSLVFHFSGHGRQRKDDNGDEVD-GRDEELCPVDYKVSGNI 124
T +NI + + L++ ++GD L H+SGHG + + G+E D G DE + P D I
Sbjct: 58 TGKNIRQALSELIKPAKSGDVLFVHYSGHGTRVPPETGEEDDTGFDECIVPSDL---NPI 114
Query: 125 LDDDINDAIVKPLTQGVKLHAIIDTCHSGTMLD 157
DDD D +V+ + +G ++ + D+CHSG ++D
Sbjct: 115 PDDDFRD-LVEQVPEGCQITIVSDSCHSGGLID 146
>AT1G79340.1 | chr1:29842849-29844368 FORWARD LENGTH=419
Length = 418
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 88/152 (57%), Gaps = 10/152 (6%)
Query: 8 KRALLVGVSYKGDTSRELTGAAEDVKNM-NSLLKKFLFPEESIHMLTEELGAKDPLKAPT 66
K+A+L+G++Y G T EL G DV+ M L++++ F EE+I +L + + PT
Sbjct: 3 KKAVLIGINYPG-TKAELRGCVNDVRRMYKCLVERYGFSEENITVL---IDTDESSTQPT 58
Query: 67 RENIMKEMRWLVEGCRAGDSLVFHFSGHGRQRKDDNGDEVD-GRDEELCPVDYKVSGNIL 125
+NI + + LVE +GD LV H+SGHG + + G++ D G DE + P D + I
Sbjct: 59 GKNIRRALADLVESADSGDVLVVHYSGHGTRLPAETGEDDDTGFDECIVPCDMNL---IT 115
Query: 126 DDDINDAIVKPLTQGVKLHAIIDTCHSGTMLD 157
DDD D +V + G ++ I D+CHSG ++D
Sbjct: 116 DDDFRD-LVDKVPPGCRMTIISDSCHSGGLID 146
>AT1G79320.1 | chr1:29836686-29837908 FORWARD LENGTH=369
Length = 368
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 106/202 (52%), Gaps = 14/202 (6%)
Query: 7 GKRALLVGVSYKGDTSRELTGAAEDVKNMN-SLLKKFLFPEESIHMLTEELGAKDPLKAP 65
K+ALL+G++Y G T EL G DV+ M SL++++ F EE+I ML + + P
Sbjct: 2 AKKALLIGINYVG-TKAELRGCVNDVRRMRISLVERYGFSEENIKMLIDTDSSS---IKP 57
Query: 66 TRENIMKEMRWLVEGCRAGDSLVFHFSGHGRQRKDDNGDEVD-GRDEELCPVDYKVSGNI 124
T +NI + + LVE ++GD L H+SGHG + + G++ D G DE + P D + I
Sbjct: 58 TGKNIRQALLDLVEPAKSGDVLFVHYSGHGTRLPAETGEDDDTGYDECIVPSDMNL---I 114
Query: 125 LDDDINDAIVKPLTQGVKLHAIIDTCHSGTMLDLPYLCRFNRMGLCSRYKWVGQTRWRLS 184
DDD D +V + + + I D+CHSG ++D ++G ++ K ++
Sbjct: 115 TDDDFRD-LVDMVPKDCPITIISDSCHSGGLIDEAK----EQIGESTKKKKDSGDSSTIN 169
Query: 185 PKKEWAMVPVGGHAISISGCKD 206
+ E ++ VG ++ + D
Sbjct: 170 KETEAEIIEVGNRSLPLETLID 191
>AT1G79330.1 | chr1:29838722-29840137 FORWARD LENGTH=411
Length = 410
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 88/152 (57%), Gaps = 10/152 (6%)
Query: 8 KRALLVGVSYKGDTSRELTGAAEDVKNMN-SLLKKFLFPEESIHMLTEELGAKDPLKAPT 66
K+A+L+G++Y G T EL G DV+ ++ SL+ +F F E +I TE + + PT
Sbjct: 3 KKAVLIGINYPG-TKAELRGCVNDVRRVHKSLVDRFGFSERNI---TELIDTDESSTKPT 58
Query: 67 RENIMKEMRWLVEGCRAGDSLVFHFSGHGRQRKDDNGDEVD-GRDEELCPVDYKVSGNIL 125
+NI + + LVE + GD LV H+SGHG + + G++ D G DE + P D + I
Sbjct: 59 GKNIRRALLNLVESAKPGDVLVVHYSGHGTRLPAETGEDDDTGYDECIVPCDMNL---IT 115
Query: 126 DDDINDAIVKPLTQGVKLHAIIDTCHSGTMLD 157
DD+ D +V+ + + + I D+CHSG ++D
Sbjct: 116 DDEFRD-LVEKVPKEAHITIISDSCHSGGLID 146
>AT5G04200.1 | chr5:1153893-1154870 FORWARD LENGTH=326
Length = 325
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 119/269 (44%), Gaps = 41/269 (15%)
Query: 10 ALLVGVSYKGDTSRELTGAAEDVKNMN-SLLKKFLFPEESIHMLTEELGAKDPLKAPTRE 68
A+LVG +Y +T EL G DV M ++L +F F ++ I +LT+E +K PT
Sbjct: 12 AVLVGCNYP-NTRNELHGCINDVLAMKETILSRFGFKQDDIEVLTDEPESK---VKPTGA 67
Query: 69 NIMKEMRWLVEGCRAG--DSLVFHFSGHGRQRKDDNGDEVDGRDEELCPVDYKVSGNILD 126
NI +R +V+ +AG D L FH+SGHG + +DE + P D+ + I D
Sbjct: 68 NIKAALRRMVDKAQAGSGDILFFHYSGHGTRIPSVKSAHPFKQDEAIVPCDFNL---ITD 124
Query: 127 DDINDAIVKPLTQGVKLHAIIDTCHSGTMLDLPYLCRFNRMGLCSRYKWVGQTRW--RLS 184
D + +V L +G I D+CHSG ++D + +G + +S
Sbjct: 125 VDFRE-LVNQLPKGTSFTMISDSCHSGGLID-------------KEKEQIGPSSVSSNIS 170
Query: 185 PKKEWAMVPVGGHAISISGCKDYQNSLEPDNTAGGGVMTWSFLEAVGSRR-------TMT 237
P E + A+ D+ +SL T+ G LE G M
Sbjct: 171 PAIETTNKTITSRALPFKAVLDHLSSLTGITTSDIGT---HLLELFGRDAGLKFRLPAMD 227
Query: 238 YGELLDSMRAKVHHRLQQSSSGKCLVTGC 266
+LL++M A+ H SG L++GC
Sbjct: 228 LMDLLETMTAREKH----VDSG-ILMSGC 251
>AT1G16420.1 | chr1:5612304-5613829 REVERSE LENGTH=382
Length = 381
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 82/153 (53%), Gaps = 11/153 (7%)
Query: 7 GKRALLVGVSYKGDTSRELTGAAEDVKNMNS-LLKKFLFPEESIHMLTEELGAKDPLKAP 65
K+ALL+G++Y G T+ EL G DV M L++ + F + I ++ + P
Sbjct: 2 AKKALLIGINYPG-TAVELRGCVNDVHRMQKCLIELYGFANKDIVIMID---TDKSCIQP 57
Query: 66 TRENIMKEMRWLVEGCRAGDSLVFHFSGHGRQRKD--DNGDEVDGRDEELCPVDYKVSGN 123
T +NI E+ L+ ++GD LVFH+SGHG + ++ ++ G DE + P D N
Sbjct: 58 TGKNICDELDNLIASGQSGDFLVFHYSGHGTRIPPGIEDSEDPTGFDECITPCDM----N 113
Query: 124 ILDDDINDAIVKPLTQGVKLHAIIDTCHSGTML 156
++ D +V + +G +L I D+CHSG ++
Sbjct: 114 LIKDQQFREMVSRVKEGCQLTIISDSCHSGGLI 146
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.136 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,278,518
Number of extensions: 326192
Number of successful extensions: 784
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 760
Number of HSP's successfully gapped: 9
Length of query: 302
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 204
Effective length of database: 8,419,801
Effective search space: 1717639404
Effective search space used: 1717639404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)