BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0389000 Os03g0389000|Os03g0389000
(400 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G02170.1 | chr1:411883-413426 FORWARD LENGTH=368 318 4e-87
AT4G25110.1 | chr4:12887738-12889953 REVERSE LENGTH=419 296 1e-80
AT5G64240.2 | chr5:25695836-25697249 FORWARD LENGTH=363 290 8e-79
AT1G79340.1 | chr1:29842849-29844368 FORWARD LENGTH=419 96 4e-20
AT1G79310.1 | chr1:29833986-29835412 FORWARD LENGTH=404 93 2e-19
AT1G79330.1 | chr1:29838722-29840137 FORWARD LENGTH=411 93 3e-19
AT5G04200.1 | chr5:1153893-1154870 FORWARD LENGTH=326 91 1e-18
AT1G79320.1 | chr1:29836686-29837908 FORWARD LENGTH=369 85 6e-17
AT1G16420.1 | chr1:5612304-5613829 REVERSE LENGTH=382 83 2e-16
>AT1G02170.1 | chr1:411883-413426 FORWARD LENGTH=368
Length = 367
Score = 318 bits (815), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 168/309 (54%), Positives = 206/309 (66%), Gaps = 18/309 (5%)
Query: 99 PSGYPFVPGRKRALLVGVSYKGSSYELEGTVNDVDCMRRLLGESFGFPADSILVLTEELG 158
P P GRKRA++ G+SY+ S +EL+G +ND CMR LL F F DSIL+LTEE
Sbjct: 70 PGQLPHPHGRKRAVICGISYRFSRHELKGCINDAKCMRHLLINKFKFSPDSILMLTEE-- 127
Query: 159 EGDPSRSPTRANLLAAMRWLVEGCDAGDSLVFHFSGHGVQKLDVNGDEVDGYNEALCPVD 218
E DP R PT+ N+ A+ WLV+GC AGDSLVFH+SGHG ++ + NGDEVDGY+E LCP+D
Sbjct: 128 ETDPYRIPTKQNMRMALYWLVQGCTAGDSLVFHYSGHGSRQRNYNGDEVDGYDETLCPLD 187
Query: 219 FERSGKILDDEINETIVRPLVAGAKLHAIVDTCHSGTILDLPFLCRLSRTGYWQWENHCR 278
FE G I+DDEIN TIVRPL G KLH+I+D CHSGT+LDLPFLCR++R G + WE+H
Sbjct: 188 FETQGMIVDDEINATIVRPLPHGVKLHSIIDACHSGTVLDLPFLCRMNRAGQYVWEDHRP 247
Query: 279 RPELAKGTSGGLAISISGCSDDQKSADSSGFSSEQXXXXXXIGAMTYSFIRAVE-SEPGT 337
R L KGT+GG AISISGC DDQ SAD+S S GAMT+ FI+A+E S GT
Sbjct: 248 RSGLWKGTAGGEAISISGCDDDQTSADTSALSK-----ITSTGAMTFCFIQAIERSAQGT 302
Query: 338 TYGRLLAAMRATIREGQQGSSVRRLLPGRLGSFVRKMIPSGGV------QEPQLCASEVF 391
TYG LL +MR TIR + + S M+ +GG QEPQL A + F
Sbjct: 303 TYGSLLNSMRTTIRNTGNDGGGSGGVVTTVLS----MLLTGGSAIGGLRQEPQLTACQTF 358
Query: 392 DIYRKPFLL 400
D+Y KPF L
Sbjct: 359 DVYAKPFTL 367
>AT4G25110.1 | chr4:12887738-12889953 REVERSE LENGTH=419
Length = 418
Score = 296 bits (758), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 156/314 (49%), Positives = 197/314 (62%), Gaps = 25/314 (7%)
Query: 105 VPGRKRALLVGVSYKGSSYELEGTVNDVDCMRRLLGESFGFPADSILVLTEELGEGDPSR 164
V G+KRA++VGVSYK + EL+G +ND +CM+ +L + F FP IL+LTEE E DP R
Sbjct: 112 VHGQKRAVIVGVSYKNTKDELKGCINDANCMKFMLMKRFQFPESCILMLTEE--EADPMR 169
Query: 165 SPTRANLLAAMRWLVEGCDAGDSLVFHFSGHGVQKLDVNGDEVDGYNEALCPVDFERSGK 224
PT+ N+ AM WLV C GDSLVFHFSGHG ++D NGDEVDG++E L PVD SG
Sbjct: 170 WPTKNNITMAMHWLVLSCKPGDSLVFHFSGHGNNQMDDNGDEVDGFDETLLPVDHRTSGV 229
Query: 225 ILDDEINETIVRPLVAGAKLHAIVDTCHSGTILDLPFLCRLSRTGYWQWENHCRRPELAK 284
I+DDEIN TIVRPL G KLHAIVD CHSGT++DLP+LCR+ R G ++WE+H + + K
Sbjct: 230 IVDDEINATIVRPLPYGVKLHAIVDACHSGTVMDLPYLCRMDRLGNYEWEDHRPKTGMWK 289
Query: 285 GTSGGLAISISGCSDDQKSADSSGFSSEQXXXXXXIGAMTYSFIRAVESEPGTTYGRLLA 344
GTSGG S +GC DDQ SAD+ Q GAMTY+FI+A+E G TYG LL
Sbjct: 290 GTSGGEVFSFTGCDDDQTSADTP-----QLSGSAWTGAMTYAFIQAIERGHGMTYGSLLN 344
Query: 345 AMRATIREGQQGSSVRRLLPGRLGSFVRKMI------------------PSGGVQEPQLC 386
AMR+T+ E + R L+ F+ ++ QEPQL
Sbjct: 345 AMRSTVHEIFDKNKGRELVEVGGADFLSTLLGLLILGASPPDEEEEVNQAPQKTQEPQLS 404
Query: 387 ASEVFDIYRKPFLL 400
A+E F +Y KPF L
Sbjct: 405 ANEAFAVYEKPFSL 418
>AT5G64240.2 | chr5:25695836-25697249 FORWARD LENGTH=363
Length = 362
Score = 290 bits (742), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 154/295 (52%), Positives = 192/295 (65%), Gaps = 21/295 (7%)
Query: 107 GRKRALLVGVSYKGSSYELEGTVNDVDCMRRLLGESFGFPADSILVLTEELGEGDPSRSP 166
G+KRA+L GV+YKG SY L+G ++D MR LL + GFP DSIL+LTE+ E P R P
Sbjct: 88 GKKRAVLCGVNYKGKSYSLKGCISDAKSMRSLLVQQMGFPIDSILMLTED--EASPQRIP 145
Query: 167 TRANLLAAMRWLVEGCDAGDSLVFHFSGHGVQKLDVNGDEVDGYNEALCPVDFERSGKIL 226
T+ N+ AMRWLVEG A DSLVFHFSGHG Q+ D NGDE+DG +EALCP+D E GKI+
Sbjct: 146 TKRNIRKAMRWLVEGNRARDSLVFHFSGHGSQQNDYNGDEIDGQDEALCPLDHETEGKII 205
Query: 227 DDEINETIVRPLVAGAKLHAIVDTCHSGTILDLPFLCRLSRTGYWQWENHCRRPELAKGT 286
DDEIN +VRPLV GAKLHA++D C+SGT+LDLPF+CR+ R G ++WE+H R KGT
Sbjct: 206 DDEINRILVRPLVHGAKLHAVIDACNSGTVLDLPFICRMERNGSYEWEDH-RSVRAYKGT 264
Query: 287 SGGLAISISGCSDDQKSADSSGFSSEQXXXXXXIGAMTYSFIRAVESE-PGTTYGRLLAA 345
GG A S C DD+ S + F+ + GAMTYSFI+AV++ P TYG LL
Sbjct: 265 DGGAAFCFSACDDDESSGYTPVFTGKN------TGAMTYSFIKAVKTAGPAPTYGHLLNL 318
Query: 346 MRATIREGQQGSSVRRLLPGRLGSFVRKMIPSGGVQEPQLCASEVFDIYRKPFLL 400
M + IRE Q RL +F S EP L +SE FD+Y F+L
Sbjct: 319 MCSAIREAQ----------SRL-AFNGDYTSSDASAEPLLTSSEEFDVYATKFVL 362
>AT1G79340.1 | chr1:29842849-29844368 FORWARD LENGTH=419
Length = 418
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 88/151 (58%), Gaps = 8/151 (5%)
Query: 109 KRALLVGVSYKGSSYELEGTVNDVDCMRRLLGESFGFPADSILVLTEELGEGDPSRSPTR 168
K+A+L+G++Y G+ EL G VNDV M + L E +GF ++I VL + + S PT
Sbjct: 3 KKAVLIGINYPGTKAELRGCVNDVRRMYKCLVERYGFSEENITVL---IDTDESSTQPTG 59
Query: 169 ANLLAAMRWLVEGCDAGDSLVFHFSGHGVQKLDVNGDEVD-GYNEALCPVDFERSGKILD 227
N+ A+ LVE D+GD LV H+SGHG + G++ D G++E + P D I D
Sbjct: 60 KNIRRALADLVESADSGDVLVVHYSGHGTRLPAETGEDDDTGFDECIVPCDMNL---ITD 116
Query: 228 DEINETIVRPLVAGAKLHAIVDTCHSGTILD 258
D+ + +V + G ++ I D+CHSG ++D
Sbjct: 117 DDFRD-LVDKVPPGCRMTIISDSCHSGGLID 146
>AT1G79310.1 | chr1:29833986-29835412 FORWARD LENGTH=404
Length = 403
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 86/151 (56%), Gaps = 8/151 (5%)
Query: 109 KRALLVGVSYKGSSYELEGTVNDVDCMRRLLGESFGFPADSILVLTEELGEGDPSRSPTR 168
KRALL+G++Y G++ EL+G VNDV M + L + FGF + I VL + + PT
Sbjct: 3 KRALLIGINYPGTTEELQGCVNDVHRMHKCLVDRFGFAEEDITVL---IDTDESYTQPTG 59
Query: 169 ANLLAAMRWLVEGCDAGDSLVFHFSGHGVQKLDVNGDEVD-GYNEALCPVDFERSGKILD 227
N+ A+ L++ +GD L H+SGHG + G+E D G++E + P D I D
Sbjct: 60 KNIRQALSELIKPAKSGDVLFVHYSGHGTRVPPETGEEDDTGFDECIVPSDL---NPIPD 116
Query: 228 DEINETIVRPLVAGAKLHAIVDTCHSGTILD 258
D+ + +V + G ++ + D+CHSG ++D
Sbjct: 117 DDFRD-LVEQVPEGCQITIVSDSCHSGGLID 146
>AT1G79330.1 | chr1:29838722-29840137 FORWARD LENGTH=411
Length = 410
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 95/186 (51%), Gaps = 16/186 (8%)
Query: 109 KRALLVGVSYKGSSYELEGTVNDVDCMRRLLGESFGFPADSILVLTEELGEGDPSRSPTR 168
K+A+L+G++Y G+ EL G VNDV + + L + FGF +I TE + + S PT
Sbjct: 3 KKAVLIGINYPGTKAELRGCVNDVRRVHKSLVDRFGFSERNI---TELIDTDESSTKPTG 59
Query: 169 ANLLAAMRWLVEGCDAGDSLVFHFSGHGVQKLDVNGDEVD-GYNEALCPVDFERSGKILD 227
N+ A+ LVE GD LV H+SGHG + G++ D GY+E + P D I D
Sbjct: 60 KNIRRALLNLVESAKPGDVLVVHYSGHGTRLPAETGEDDDTGYDECIVPCDMNL---ITD 116
Query: 228 DEINETIVRPLVAGAKLHAIVDTCHSGTILDLPFLCRLSRTGYWQWENHCRRPELAKGTS 287
DE + +V + A + I D+CHSG ++D E+ ++P+ G S
Sbjct: 117 DEFRD-LVEKVPKEAHITIISDSCHSGGLID--------EAKEQIGESTKKKPKKESGGS 167
Query: 288 GGLAIS 293
GL I
Sbjct: 168 SGLGIK 173
>AT5G04200.1 | chr5:1153893-1154870 FORWARD LENGTH=326
Length = 325
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 81/153 (52%), Gaps = 9/153 (5%)
Query: 108 RKRALLVGVSYKGSSYELEGTVNDVDCMRRLLGESFGFPADSILVLTEELGEGDPSRSPT 167
++ A+LVG +Y + EL G +NDV M+ + FGF D I VLT+ E + PT
Sbjct: 9 KRLAVLVGCNYPNTRNELHGCINDVLAMKETILSRFGFKQDDIEVLTD---EPESKVKPT 65
Query: 168 RANLLAAMRWLVEGCDA--GDSLVFHFSGHGVQKLDVNGDEVDGYNEALCPVDFERSGKI 225
AN+ AA+R +V+ A GD L FH+SGHG + V +EA+ P DF I
Sbjct: 66 GANIKAALRRMVDKAQAGSGDILFFHYSGHGTRIPSVKSAHPFKQDEAIVPCDFNL---I 122
Query: 226 LDDEINETIVRPLVAGAKLHAIVDTCHSGTILD 258
D + E +V L G I D+CHSG ++D
Sbjct: 123 TDVDFRE-LVNQLPKGTSFTMISDSCHSGGLID 154
>AT1G79320.1 | chr1:29836686-29837908 FORWARD LENGTH=369
Length = 368
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 83/151 (54%), Gaps = 8/151 (5%)
Query: 109 KRALLVGVSYKGSSYELEGTVNDVDCMRRLLGESFGFPADSILVLTEELGEGDPSRSPTR 168
K+ALL+G++Y G+ EL G VNDV MR L E +GF ++I +L + S PT
Sbjct: 3 KKALLIGINYVGTKAELRGCVNDVRRMRISLVERYGFSEENIKML---IDTDSSSIKPTG 59
Query: 169 ANLLAAMRWLVEGCDAGDSLVFHFSGHGVQKLDVNGDEVD-GYNEALCPVDFERSGKILD 227
N+ A+ LVE +GD L H+SGHG + G++ D GY+E + P D I D
Sbjct: 60 KNIRQALLDLVEPAKSGDVLFVHYSGHGTRLPAETGEDDDTGYDECIVPSDMNL---ITD 116
Query: 228 DEINETIVRPLVAGAKLHAIVDTCHSGTILD 258
D+ + +V + + I D+CHSG ++D
Sbjct: 117 DDFRD-LVDMVPKDCPITIISDSCHSGGLID 146
>AT1G16420.1 | chr1:5612304-5613829 REVERSE LENGTH=382
Length = 381
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 94/186 (50%), Gaps = 22/186 (11%)
Query: 109 KRALLVGVSYKGSSYELEGTVNDVDCMRRLLGESFGFPADSILVLTEELGEGDPSRS--- 165
K+ALL+G++Y G++ EL G VNDV M++ L E +GF I+++ D +S
Sbjct: 3 KKALLIGINYPGTAVELRGCVNDVHRMQKCLIELYGFANKDIVIMI------DTDKSCIQ 56
Query: 166 PTRANLLAAMRWLVEGCDAGDSLVFHFSGHGVQKLDVNGDEVD--GYNEALCPVDFERSG 223
PT N+ + L+ +GD LVFH+SGHG + D D G++E + P D
Sbjct: 57 PTGKNICDELDNLIASGQSGDFLVFHYSGHGTRIPPGIEDSEDPTGFDECITPCDMNL-- 114
Query: 224 KILDDEINETIVRPLVAGAKLHAIVDTCHSGTILD-------LPFLCRLSRTGYWQWENH 276
I D + E + R + G +L I D+CHSG ++ + + + E+H
Sbjct: 115 -IKDQQFREMVSR-VKEGCQLTIISDSCHSGGLIQEVKEQIGESHMKPVDKVKEQIEESH 172
Query: 277 CRRPEL 282
++P+L
Sbjct: 173 MKQPKL 178
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.139 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,447,177
Number of extensions: 290965
Number of successful extensions: 615
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 590
Number of HSP's successfully gapped: 9
Length of query: 400
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 299
Effective length of database: 8,337,553
Effective search space: 2492928347
Effective search space used: 2492928347
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)