BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0387800 Os03g0387800|AK060532
(290 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G35780.1 | chr1:13277778-13280113 REVERSE LENGTH=287 266 6e-72
AT4G39860.1 | chr4:18499909-18501472 FORWARD LENGTH=300 253 1e-67
AT1G78150.3 | chr1:29404996-29406341 FORWARD LENGTH=304 233 7e-62
AT2G22270.1 | chr2:9463765-9465282 FORWARD LENGTH=329 165 2e-41
>AT1G35780.1 | chr1:13277778-13280113 REVERSE LENGTH=287
Length = 286
Score = 266 bits (681), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 155/302 (51%), Positives = 191/302 (63%), Gaps = 28/302 (9%)
Query: 1 MERPAPVRKSHTSTADLLAWPQQQHQPDGHAASTPSPARRPHQPSEALRKVVFGGQVTEE 60
ME+ PVRK H STADLL WP+ Q A S+ S AR HQPS+ + KVVFGGQVT+E
Sbjct: 1 MEKNTPVRKPHMSTADLLTWPENQPFESPAAVSSRSAARS-HQPSDGISKVVFGGQVTDE 59
Query: 61 EAESLNKRKPCSAPKWKEMTGSGIFXXXXXXXXXXXXXXXXXXXXXXRNYQ---PVTVSH 117
E ESLNKRKPCS K KE+TGSGIF R +Q +SH
Sbjct: 60 EVESLNKRKPCSNYKMKEITGSGIFSVYEENDDSELASANSATNGKSRTFQQPPAAIMSH 119
Query: 118 ISFAEDGSVPPKKPTSVAEVAKQRELSGTLQSEADSKMKKQISNAKSKELSGHGLFDP-- 175
ISF E+ V PKKP +V EVAKQRELSGTL+ ++D+K+ KQ S+AK KELSGH +F P
Sbjct: 120 ISFGEEEIVTPKKPATVPEVAKQRELSGTLEYQSDAKLNKQFSDAKCKELSGHNIFAPPP 179
Query: 176 -QDVRPNGARNTANGTGASHTPVRN-ANVSSFSFGEANT--DSVTKTAKKITGKKFTDLT 231
+RP VR A +F GE++T D KTAKKI +KFTDL+
Sbjct: 180 EIKLRPT---------------VRALAYKDNFDLGESDTKPDGELKTAKKIADRKFTDLS 224
Query: 232 GNNIFKGDE---APASAEKHLSTAKLKEMTGSNIFAEGQAPTREYHSGNRKPPGGESSIA 288
GNN+FK D + A+AE+ LSTAKLKE++G++IFA+ +A +R+Y G RKPPGGESSIA
Sbjct: 225 GNNVFKSDVSSPSSATAERLLSTAKLKEISGNDIFADAKAQSRDYFGGVRKPPGGESSIA 284
Query: 289 LV 290
LV
Sbjct: 285 LV 286
>AT4G39860.1 | chr4:18499909-18501472 FORWARD LENGTH=300
Length = 299
Score = 253 bits (645), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 149/305 (48%), Positives = 193/305 (63%), Gaps = 21/305 (6%)
Query: 1 MERPAPVRKSHTSTADLLAWPQQQHQPDGHAASTPSPARRPHQPSEALRKVVFGGQVTEE 60
MER PVR HTSTADLL+W + + A R HQPS+ + K++ GGQ+T+E
Sbjct: 1 MERNTPVRNPHTSTADLLSWSETPPP----PHHSTPSAARSHQPSDGISKILGGGQITDE 56
Query: 61 EAESLNKRKPCSAPKWKEMTGSGIFXXXXXXXXXXXXXXXXXXXXXXRNYQPVT--VSHI 118
EA+SLNK K CS K KEMTGSGIF R YQ +S I
Sbjct: 57 EAQSLNKLKNCSGYKLKEMTGSGIFTDKGKVGSESDATTDPKTGL--RYYQQTLNGMSQI 114
Query: 119 SFAEDGSVPPKKPTSVAEVAKQRELSGTLQSEADSKMKKQISNAKSKELSGHGLFDP-QD 177
SF+ DG+V PKKPT++ EVAKQRELSG L +EAD K KQIS+AK +E+SGH +F P +
Sbjct: 115 SFSADGNVSPKKPTTLTEVAKQRELSGNLLTEADLKSNKQISSAKIEEISGHDIFAPPSE 174
Query: 178 VRPN---GARNTANGTGASHTPV-RN----ANVSSFSFGEANT----DSVTKTAKKITGK 225
++P A+ A G P RN VS+ + G++N + V KT+KKI +
Sbjct: 175 IQPRSLVAAQQEARGNRDMGEPAPRNLRTSVKVSNPAGGQSNILFSEEPVVKTSKKIHNQ 234
Query: 226 KFTDLTGNNIFKGDEAPASAEKHLSTAKLKEMTGSNIFAEGQAPTREYHSGNRKPPGGES 285
KF +LTGN IFKGDE+P SA+K LS+AKL+EM+G+NIFA+G++ +R+Y G RKPPGGES
Sbjct: 235 KFQELTGNGIFKGDESPGSADKQLSSAKLREMSGNNIFADGKSESRDYFGGVRKPPGGES 294
Query: 286 SIALV 290
SI+LV
Sbjct: 295 SISLV 299
>AT1G78150.3 | chr1:29404996-29406341 FORWARD LENGTH=304
Length = 303
Score = 233 bits (595), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 146/322 (45%), Positives = 187/322 (58%), Gaps = 51/322 (15%)
Query: 1 MERPAPVRKSHTSTADLLAWPQQQHQPDGHAASTPSPARRPHQPSEALRKVVFGGQVTEE 60
MER PVRK HTSTADLL W + +S A R HQPS+ + KVVFGGQVT+E
Sbjct: 1 MERSTPVRKPHTSTADLLTWSEVPPPD--SPSSASRSAVRSHQPSDGISKVVFGGQVTDE 58
Query: 61 EAESLNKR-----------------------------KPCSAPKWKEMTGSGIFXXXXXX 91
E ESLN+R KPCS K KE+TGSGIF
Sbjct: 59 EVESLNRRILDDAFDSFMRLVIYTNVKTCENVYDVIRKPCSEHKMKEITGSGIFSRNEKD 118
Query: 92 XXXXXXXXXXXXXXXXRNYQPVT--VSHISFAEDGSVPPKKPTSVAEVAKQRELSGTLQS 149
YQ +S ISF E+ ++ PKKP +V EVAKQRELSGT+++
Sbjct: 119 DASEPLPV----------YQQAVNGISQISFGEEENLSPKKPATVPEVAKQRELSGTMEN 168
Query: 150 EADSKMKKQISNAKSKELSGHGLFDPQ-DVRPNGARNTANGTGASHTPVRNANVSSFSFG 208
E+ +K++KQ+S+AK KE+SG +F P +++P +GT + N N+ + S
Sbjct: 169 ESANKLQKQLSDAKYKEISGQNIFAPPPEIKPR------SGTNRALALKDNFNLGAES-Q 221
Query: 209 EANTDSVTKTAKKITGKKFTDLTGNNIFKGDEAPASAEKHLSTAKLKEMTGSNIFAEGQA 268
A DS KTAKKI KKF +L+GN+IFKGD A ++ EKHLS AKLKE+ G+NIFA+G+
Sbjct: 222 TAEEDSSVKTAKKIYDKKFAELSGNDIFKGDAASSNVEKHLSQAKLKEIGGNNIFADGKV 281
Query: 269 PTREYHSGNRKPPGGESSIALV 290
R+Y G RKPPGGE+SIALV
Sbjct: 282 EARDYLGGVRKPPGGETSIALV 303
>AT2G22270.1 | chr2:9463765-9465282 FORWARD LENGTH=329
Length = 328
Score = 165 bits (418), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 125/329 (37%), Positives = 173/329 (52%), Gaps = 58/329 (17%)
Query: 11 HTSTADLLAWPQQQHQPDGHAASTPSPARRPHQPSEALRKVVFGG-QVTEEEAESLN--- 66
H STADLL+W + + +PD A A R +QPS+ + V+ GG Q+T E +SLN
Sbjct: 9 HHSTADLLSWSEIR-RPDYSTA-----ANRSNQPSDGMNDVLGGGGQITNAETKSLNTNV 62
Query: 67 -KRKPCSAPKWKEMTGSGIFXXXXXXXXXXXXXXXXXXXXXXR----------------- 108
RK CS K KEMTGS IF +
Sbjct: 63 SHRKNCSGHKLKEMTGSDIFSDDGKYDPNHQTRIHYHQDQLSQISFSGEENATTPMNGKD 122
Query: 109 --------NYQPVTVSHISFAEDGSVPPKKPTSVAEVAKQRELSGTLQSEADSKMKK-QI 159
+Y S ISF+ + +V PKKPT++ E AKQ+ELS T++++ADSK KK QI
Sbjct: 123 DPNHQTRIHYHQDQRSQISFSGEENVTPKKPTTLNEAAKQKELSRTVETQADSKCKKKQI 182
Query: 160 SNAKSKELSGHGLFDPQDVRPN------------GARNTANGT-GASHTPVRNANVSSFS 206
SN K+K +SGH +F + +P G +NT +S V+ +N S +
Sbjct: 183 SNTKNKAMSGHDIFASPESQPRRLFGGATQSEVKGNKNTEESAPRSSRASVKTSNGQSSN 242
Query: 207 --FGEANTDSVTKTAKKITGKK--FTDLTGNNIFKGDEAP-ASAEKHLSTAKLKEMTGSN 261
F E + V K++KKI +K F LT N IFK D+ P +EK S+AK +EM+G N
Sbjct: 243 RLFSE---EHVVKSSKKIHNQKSQFQGLTSNGIFKSDKIPPGYSEKMQSSAKKREMSGHN 299
Query: 262 IFAEGQAPTREYHSGNRKPPGGESSIALV 290
IFA+G++ R+Y+ G R+PPGGESSI+LV
Sbjct: 300 IFADGKSEYRDYYGGARRPPGGESSISLV 328
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.307 0.123 0.350
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,169,160
Number of extensions: 244366
Number of successful extensions: 683
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 650
Number of HSP's successfully gapped: 5
Length of query: 290
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 192
Effective length of database: 8,419,801
Effective search space: 1616601792
Effective search space used: 1616601792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 111 (47.4 bits)