BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0385900 Os03g0385900|AK072987
         (332 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G31817.1  | chr1:11414932-11416356 REVERSE LENGTH=315          129   3e-30
ATCG00750.1  | chrC:78960-79376 REVERSE LENGTH=139                 59   5e-09

>AT1G31817.1 | chr1:11414932-11416356 REVERSE LENGTH=315
          Length = 314

 Score =  129 bits (323), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 64/136 (47%), Positives = 89/136 (65%), Gaps = 1/136 (0%)

Query: 197 IFDEHKQSLVKGKRDFVHVLLKRNKTFVTVTDVRGNKKTGASAGCLEDRKGRSRLSKYAA 256
           IF   ++  ++   D +H+ + RN TFVTVTD +GN K  A++G L D KG  +++ Y A
Sbjct: 180 IFSHFQRPNLETNADIIHIKMLRNNTFVTVTDSKGNVKCKATSGSLPDLKGGRKMTNYTA 239

Query: 257 EATAEHVGRAARKMGLKSVVMKVKGTTFFNKKKKVILSXXXXXXXXXXXXQSPVVLIHDV 316
           +ATAE++GR A+ MGLKSVV+KV G T F KKKK I++            Q+P+V I D 
Sbjct: 240 DATAENIGRRAKAMGLKSVVVKVNGFTHFGKKKKAIIA-FRDGFTNSRSDQNPIVYIEDT 298

Query: 317 TQLPHNGCRLPKQRRV 332
           T+  HNGCRLP++RRV
Sbjct: 299 TRKAHNGCRLPRKRRV 314



>ATCG00750.1 | chrC:78960-79376 REVERSE LENGTH=139
          Length = 138

 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 61/128 (47%), Gaps = 25/128 (19%)

Query: 212 FVHVLLKRNKTFVTVTDVRGNKKTGASAGCLEDRKGRSRLSKYAAEATAEHVGRAARKMG 271
            +HV    N T VTVTDVRG   + +SAG    R G  R + +AA+  A +  RA    G
Sbjct: 29  VIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFR-GTRRGTPFAAQTAAGNAIRAVVDQG 87

Query: 272 LKSVVMKVKGTTFFN-------KKKKVILSXXXXXXXXXXXXQSPVVLIHDVTQLPHNGC 324
           ++   +++KG            ++  ++LS                  + DVT +PHNGC
Sbjct: 88  MQRAEVRIKGPGLGRDAALRAIRRSGILLS-----------------FVRDVTPMPHNGC 130

Query: 325 RLPKQRRV 332
           R PK+RRV
Sbjct: 131 RPPKKRRV 138



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.131    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,985,171
Number of extensions: 225893
Number of successful extensions: 557
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 554
Number of HSP's successfully gapped: 2
Length of query: 332
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 233
Effective length of database: 8,392,385
Effective search space: 1955425705
Effective search space used: 1955425705
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)