BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0378200 Os03g0378200|AK070099
         (460 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G17910.1  | chr4:9951322-9953689 REVERSE LENGTH=435            424   e-119

>AT4G17910.1 | chr4:9951322-9953689 REVERSE LENGTH=435
          Length = 434

 Score =  424 bits (1091), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 216/408 (52%), Positives = 289/408 (70%), Gaps = 9/408 (2%)

Query: 56  KKNDDALPGHKGFV--HYFSTLAIDYLSIVLPVLLIFTVLAEWAC-ACALSLVMLISILT 112
           KKNDD     K  +  ++ + +++D++ IV P+LL FTVL+EW      L  ++++ +  
Sbjct: 33  KKNDD----EKIVISRNWKAAISLDFIFIVFPMLLFFTVLSEWVYHGTGLLSLLVLILSV 88

Query: 113 MFKRSRSHLKAGPNELPLLRADISSYRVSVVLVTCLCILAVDFKIFPRRYAKAETYGCGI 172
             KRS S L+ G +     RA +SSYRV+++L+TCLCILAVDF IFPRRYAK ETYG  +
Sbjct: 89  TAKRSFSGLQRGQS--LSFRASVSSYRVALMLITCLCILAVDFTIFPRRYAKTETYGTSL 146

Query: 173 MDLGVGSFVVANALVSRQARNFTAMTWNKALMSISPLIFLGFARLISTSGVDYQVHVGEY 232
           MDLGVGSFV+ANA+VSRQAR+ ++  W   + + +PL+ LGF RL++TSGVDYQVHV EY
Sbjct: 147 MDLGVGSFVLANAVVSRQARDVSSGNWITGIKATAPLLLLGFIRLVTTSGVDYQVHVTEY 206

Query: 233 GVHWNFFFTLAAISILTSVIRIHPKYCGLAGLLVLTGFQTWLSFGLNEYLISNERNGGII 292
           GVHWNFFFTLAAISILTS + I  KYCGL G  VL G+QTWL  GLN YL+S+ER   II
Sbjct: 207 GVHWNFFFTLAAISILTSFVNIPAKYCGLLGFAVLAGYQTWLLSGLNTYLLSDERGTDII 266

Query: 293 SQNKEGVYSIFGYWGMYLIGVSLGYNLFFDNSSKGKSRSSQVVKVWVLAASFWIMAIILD 352
           S+NKEGVYSI GYWGMYL+GV LGY LF+   +  +S +S + +V++++   WI+ I+ D
Sbjct: 267 SKNKEGVYSILGYWGMYLLGVHLGYRLFYGKHTNIRSTTSSIARVFLVSLLLWIVTILFD 326

Query: 353 SYVERVSRRMCNFAYVMLVFGQNFQVISILTLAGFISYEKNLVLEDAFNQNMLGSFLLAN 412
           +YVER+SRR CN  YV  V  Q+ Q + I  L+ +I   K   LE+A +QN+L +FLLAN
Sbjct: 327 NYVERISRRTCNMPYVTWVLAQDLQALGIFMLSSYIPLNKLSSLEEAIDQNLLATFLLAN 386

Query: 413 ILTGVVNLSVDTLSASSGTAFMILLVYSFTLCMIAALAQFCGIRMKFW 460
           ++TG+VNL+VDT+ AS  ++ +IL  Y+F L  I     F G R+KFW
Sbjct: 387 LVTGMVNLTVDTIFASPFSSLLILTAYAFALSAIIGTIHFSGFRLKFW 434



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.327    0.139    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,224,964
Number of extensions: 364980
Number of successful extensions: 1032
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1031
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 358
Effective length of database: 8,310,137
Effective search space: 2975029046
Effective search space used: 2975029046
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 113 (48.1 bits)