BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0374900 Os03g0374900|Os03g0374900
(212 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G13620.1 | chr3:4450904-4452556 REVERSE LENGTH=479 92 3e-19
AT1G31830.1 | chr1:11418875-11420362 REVERSE LENGTH=496 72 2e-13
AT5G05630.1 | chr5:1682541-1684013 FORWARD LENGTH=491 69 1e-12
AT1G31820.1 | chr1:11416691-11418139 REVERSE LENGTH=483 66 1e-11
AT3G19553.1 | chr3:6790988-6792507 REVERSE LENGTH=480 66 1e-11
>AT3G13620.1 | chr3:4450904-4452556 REVERSE LENGTH=479
Length = 478
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 66/126 (52%), Gaps = 4/126 (3%)
Query: 1 MAELGLLPSVFARRGPGRSATPWXXXXXXXXXXXXXXFLGFDDVVATANLLYSLGTLLEF 60
MAELG LP F R + TPW ++ F D++++AN LY+LG LEF
Sbjct: 320 MAELGFLPKFFGVRSKWFN-TPWVGILISALMSLGLSYMNFTDIISSANFLYTLGMFLEF 378
Query: 61 AAFLWLRCRGRHAAALKRPYRVXXXXXXXXXMCLVPSAFLAYVIAVAGWRVSAIAAGLTA 120
A+F+WLR R LKRPYRV MCL+PSAFL ++ A V I +T
Sbjct: 379 ASFIWLR---RKLPQLKRPYRVPLKIPGLVVMCLIPSAFLVLILVFATKIVYLICGVMTI 435
Query: 121 LGVGWH 126
+GW+
Sbjct: 436 GAIGWY 441
>AT1G31830.1 | chr1:11418875-11420362 REVERSE LENGTH=496
Length = 495
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 68/130 (52%), Gaps = 5/130 (3%)
Query: 1 MAELGLLPSVFARRGPGRSATPWXXXXXXXXXXXXXXFLGFDDVVATANLLYSLGTLLEF 60
MAE G+LP FA+R R TP +L F ++VA NLLY +G +LEF
Sbjct: 339 MAERGMLPEFFAKRS--RYGTPLLGILFSASGVVLLSWLSFQEIVAAENLLYCVGMILEF 396
Query: 61 AAFLWLRCRGRHAAALKRPYRVXXXXXXXXXMCLVPSAFLAYVIAVAGWRVSAIAAGLTA 120
AF +R R +H AA RPY++ MC+ P+ + V+A++ +V+A++ +
Sbjct: 397 IAF--VRMRMKHPAA-SRPYKIPIGTTGSILMCIPPTILICAVVALSSLKVAAVSIVMMI 453
Query: 121 LGVGWHGVMR 130
+G H ++
Sbjct: 454 IGFLIHPLLN 463
>AT5G05630.1 | chr5:1682541-1684013 FORWARD LENGTH=491
Length = 490
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 5/123 (4%)
Query: 1 MAELGLLPSVFARRGPGRSATPWXXXXXXXXXXXXXXFLGFDDVVATANLLYSLGTLLEF 60
MAE G+LP VFA+R R TPW +L F ++VA NLLY G +LEF
Sbjct: 345 MAERGMLPEVFAKRS--RYRTPWVGILFSASGVIILSWLSFQEIVAAENLLYCFGMVLEF 402
Query: 61 AAFLWLRCRGRHAAALKRPYRVXXXXXXXXXMCLVPSAFLAYVIAVAGWRVSAIAAGLTA 120
F +R R ++ AA RP+++ MC+ P+ + ++A +V+ ++
Sbjct: 403 ITF--VRLRMKYPAA-SRPFKIPVGVLGSVLMCIPPTVLIGVIMAFTNLKVALVSLAAIV 459
Query: 121 LGV 123
+G+
Sbjct: 460 IGL 462
>AT1G31820.1 | chr1:11416691-11418139 REVERSE LENGTH=483
Length = 482
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 5/122 (4%)
Query: 1 MAELGLLPSVFARRGPGRSATPWXXXXXXXXXXXXXXFLGFDDVVATANLLYSLGTLLEF 60
MAELG+LP +FA+R R TP L F +++A NLLY G +LEF
Sbjct: 326 MAELGILPEIFAQRS--RYGTPLLGILFSASGVLLLSGLSFQEIIAAENLLYCGGMILEF 383
Query: 61 AAFLWLRCRGRHAAALKRPYRVXXXXXXXXXMCLVPSAFLAYVIAVAGWRVSAIAAGLTA 120
AF +R R +H AA RPY++ +C+ P + VI ++ +V+ ++ +
Sbjct: 384 IAF--VRLRKKHPAA-SRPYKIPVGTVGSILICVPPIVLICLVIVLSTIKVALVSFVMVV 440
Query: 121 LG 122
+G
Sbjct: 441 IG 442
>AT3G19553.1 | chr3:6790988-6792507 REVERSE LENGTH=480
Length = 479
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 5/134 (3%)
Query: 1 MAELGLLPSVFARRGPGRSATPWXXXXXXXXXXXXXXFLGFDDVVATANLLYSLGTLLEF 60
M+E+G+LP+ FA+R + TP ++ F +++ N LY+LG LLEF
Sbjct: 314 MSEIGMLPAFFAQRS--KYGTPTISILCSATGVIFLSWMSFQEIIEFLNFLYALGMLLEF 371
Query: 61 AAFLWLRCRGRHAAALKRPYRVXXXXXXXXXMCLVPSAFLAYVIAVAGWRVSAIAAGLTA 120
AAF+ LR + L RPYRV +CL PS + V+ +A + I+ +
Sbjct: 372 AAFVKLRIKKPD---LHRPYRVPLNTFGVSMLCLPPSLLVILVMVLAAPKTFLISGVIIV 428
Query: 121 LGVGWHGVMRVVSQ 134
LG + + +V +
Sbjct: 429 LGFCLYPFLTLVKE 442
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.138 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,900,172
Number of extensions: 126948
Number of successful extensions: 301
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 291
Number of HSP's successfully gapped: 5
Length of query: 212
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 118
Effective length of database: 8,529,465
Effective search space: 1006476870
Effective search space used: 1006476870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 109 (46.6 bits)