BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0370600 Os03g0370600|Os03g0370600
(64 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G05880.1 | chr3:1756195-1756494 REVERSE LENGTH=55 81 1e-16
AT3G05890.1 | chr3:1758179-1758452 REVERSE LENGTH=55 80 2e-16
AT2G38905.1 | chr2:16244218-16244472 REVERSE LENGTH=55 75 7e-15
AT4G30650.1 | chr4:14954403-14954698 FORWARD LENGTH=74 68 8e-13
AT4G30660.1 | chr4:14955470-14955944 FORWARD LENGTH=75 61 9e-11
AT2G24040.1 | chr2:10224028-10224531 FORWARD LENGTH=76 60 3e-10
AT4G28088.1 | chr4:13961244-13961560 REVERSE LENGTH=78 60 3e-10
AT1G57550.1 | chr1:21312541-21312809 REVERSE LENGTH=53 58 9e-10
>AT3G05880.1 | chr3:1756195-1756494 REVERSE LENGTH=55
Length = 54
Score = 80.9 bits (198), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/53 (69%), Positives = 46/53 (86%)
Query: 11 RTATFVDLVIAIILPPLGVFLKVGCEIEFWICLLLTFLGYFPGIIYAVWVIVN 63
TATFVD++IAI+LPPLGVFL+ GC +EFWICL+LT LGY PGIIYA++V+
Sbjct: 2 STATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVLTK 54
>AT3G05890.1 | chr3:1758179-1758452 REVERSE LENGTH=55
Length = 54
Score = 80.1 bits (196), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 46/53 (86%)
Query: 11 RTATFVDLVIAIILPPLGVFLKVGCEIEFWICLLLTFLGYFPGIIYAVWVIVN 63
TATFV++++AIILPPLGVFLK GC++EFWICL+LT GY PGI+YA+++I
Sbjct: 2 STATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYIITK 54
>AT2G38905.1 | chr2:16244218-16244472 REVERSE LENGTH=55
Length = 54
Score = 75.1 bits (183), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 46/52 (88%)
Query: 12 TATFVDLVIAIILPPLGVFLKVGCEIEFWICLLLTFLGYFPGIIYAVWVIVN 63
+ TF+++++AI+LPP+GVFL+ GC +EFWICLLLT LGY PGIIYA++V+V
Sbjct: 3 SETFLEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54
>AT4G30650.1 | chr4:14954403-14954698 FORWARD LENGTH=74
Length = 73
Score = 68.2 bits (165), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 43/56 (76%), Gaps = 1/56 (1%)
Query: 8 MADRTATFVDLVIAIILPPLGVFLKVGC-EIEFWICLLLTFLGYFPGIIYAVWVIV 62
MA F +++IAI+LPPLGV LK GC +EF ICL+LT LGY PGIIYA++VIV
Sbjct: 1 MASNMEVFCEILIAILLPPLGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVIV 56
>AT4G30660.1 | chr4:14955470-14955944 FORWARD LENGTH=75
Length = 74
Score = 61.2 bits (147), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Query: 8 MADRTATFVDLVIAIILPPLGVFLKVGC-EIEFWICLLLTFLGYFPGIIYAVWVIV 62
M +++IAI+LPPLGV + GC +EF ICL+LT LGY PGIIYA++VIV
Sbjct: 1 MPSNCEILCEIIIAILLPPLGVCFRKGCCTVEFLICLVLTILGYVPGIIYAIYVIV 56
>AT2G24040.1 | chr2:10224028-10224531 FORWARD LENGTH=76
Length = 75
Score = 59.7 bits (143), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 40/55 (72%), Gaps = 1/55 (1%)
Query: 8 MADRTATFVDLVIAIILPPLGVFLKVGC-EIEFWICLLLTFLGYFPGIIYAVWVI 61
MA ++ IAI+LPP+GV L+ GC +EF+ICL+LT LGY PGIIYA++ I
Sbjct: 1 MASSCELCCEIFIAILLPPVGVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAI 55
>AT4G28088.1 | chr4:13961244-13961560 REVERSE LENGTH=78
Length = 77
Score = 59.7 bits (143), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 41/56 (73%), Gaps = 1/56 (1%)
Query: 8 MADRTATFVDLVIAIILPPLGVFLKVGC-EIEFWICLLLTFLGYFPGIIYAVWVIV 62
MA+ +++IAI++PPLGV L+ GC EF ICL+LT LGY PGIIYA++ IV
Sbjct: 1 MANGCEICCEIMIAILIPPLGVCLRHGCCTTEFMICLILTLLGYVPGIIYALYAIV 56
>AT1G57550.1 | chr1:21312541-21312809 REVERSE LENGTH=53
Length = 52
Score = 58.2 bits (139), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 39/51 (76%)
Query: 13 ATFVDLVIAIILPPLGVFLKVGCEIEFWICLLLTFLGYFPGIIYAVWVIVN 63
+F++++ AI +PP+GVFL+ G +EFW+CLLLT + PG+IYA++V+
Sbjct: 2 GSFLEVLCAIFIPPVGVFLRYGLGLEFWVCLLLTLFAFIPGLIYAIYVLTK 52
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.335 0.152 0.517
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,436,302
Number of extensions: 44126
Number of successful extensions: 132
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 8
Length of query: 64
Length of database: 11,106,569
Length adjustment: 37
Effective length of query: 27
Effective length of database: 10,092,177
Effective search space: 272488779
Effective search space used: 272488779
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 104 (44.7 bits)