BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0367900 Os03g0367900|AK099464
(222 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G56700.1 | chr1:21256743-21257640 FORWARD LENGTH=220 304 3e-83
AT1G23440.1 | chr1:8321940-8324019 FORWARD LENGTH=218 294 2e-80
>AT1G56700.1 | chr1:21256743-21257640 FORWARD LENGTH=220
Length = 219
Score = 304 bits (778), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 141/217 (64%), Positives = 170/217 (78%), Gaps = 1/217 (0%)
Query: 1 MGSEGPSGVTVHVTGFKKFHGVAENPTEKIVRNLESFMEKRGLPKGLTLGSCTVLETAGQ 60
MGSEGP+GVT+H+TGFKKFHGVAENPTEK+ NL+ ++ K + K + LGSCTVLETAGQ
Sbjct: 1 MGSEGPTGVTIHITGFKKFHGVAENPTEKMANNLKEYLAKNCVSKDVNLGSCTVLETAGQ 60
Query: 61 GGLGPLYEVFESAIVDKEYGLNDQGQVILLHFGVNSGTTRFALENQAINEATFRCPDELG 120
G L LY++ +SA+ KE + G+ I +HFGVNSG T+FA+E QA+NEATFRCPDELG
Sbjct: 61 GALASLYQLLQSAVNTKE-SESLTGKTIWVHFGVNSGATKFAIEQQAVNEATFRCPDELG 119
Query: 121 WKPQRAPIVSSDGSISNLRKTTVPVNEVNKSLQQMGFDVAPSDDAGRFVCNYVYYQSLRF 180
WKPQ PIV SDG IS +RKT +PV E+ K+L++ GF+V SDDAGRFVCNYVYY SLRF
Sbjct: 120 WKPQNLPIVPSDGPISTVRKTNLPVEEITKALEKNGFEVITSDDAGRFVCNYVYYHSLRF 179
Query: 181 AEQRGIKSLFVHFPLFTTISEEVQMNFVATLLEVLAS 217
AEQ +SLFVH PLF + EE QM F +LLEVLAS
Sbjct: 180 AEQNKTRSLFVHVPLFVAVDEETQMRFTVSLLEVLAS 216
>AT1G23440.1 | chr1:8321940-8324019 FORWARD LENGTH=218
Length = 217
Score = 294 bits (753), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 136/217 (62%), Positives = 168/217 (77%), Gaps = 2/217 (0%)
Query: 1 MGSEGPSGVTVHVTGFKKFHGVAENPTEKIVRNLESFMEKRGLPKGLTLGSCTVLETAGQ 60
MGSEGP +T+HVTGFKKF GV+ENPTEKI L+S++EKRGLP GL LGSC+VL+TAG+
Sbjct: 1 MGSEGPKAITIHVTGFKKFLGVSENPTEKIANGLKSYVEKRGLPSGLCLGSCSVLDTAGE 60
Query: 61 GGLGPLYEVFESAIVDKEYGLNDQGQVILLHFGVNSGTTRFALENQAINEATFRCPDELG 120
G LYEV ES++V + N+ G V+ LH GVNSG T+FA+E QA+NEA FRCPDELG
Sbjct: 61 GAKSKLYEVLESSVVSGDK--NNNGTVVWLHLGVNSGATKFAIERQAVNEAHFRCPDELG 118
Query: 121 WKPQRAPIVSSDGSISNLRKTTVPVNEVNKSLQQMGFDVAPSDDAGRFVCNYVYYQSLRF 180
W+PQR PIV DG IS ++T+ + + L++ GF+V SDDAGRFVCNYVYY SLRF
Sbjct: 119 WQPQRLPIVVEDGGISKAKETSCSTESIFQLLKKKGFEVVQSDDAGRFVCNYVYYHSLRF 178
Query: 181 AEQRGIKSLFVHFPLFTTISEEVQMNFVATLLEVLAS 217
AEQ+G KSLFVH PLF+ I E+ QM FVA+LLE +A+
Sbjct: 179 AEQKGHKSLFVHVPLFSKIDEDTQMQFVASLLEAIAA 215
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.135 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,601,799
Number of extensions: 185794
Number of successful extensions: 454
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 452
Number of HSP's successfully gapped: 2
Length of query: 222
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 127
Effective length of database: 8,502,049
Effective search space: 1079760223
Effective search space used: 1079760223
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)