BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0367800 Os03g0367800|AK108742
         (203 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G37055.1  | chr5:14641634-14642387 REVERSE LENGTH=172          173   5e-44

>AT5G37055.1 | chr5:14641634-14642387 REVERSE LENGTH=172
          Length = 171

 Score =  173 bits (439), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 84/143 (58%), Positives = 101/143 (70%), Gaps = 1/143 (0%)

Query: 62  DNXXXXXXXXXXXXXSDNAGPEVVDLNDDDEYGSADEEDHVLMQRKQSKNMKRKTRQGKA 121
           DN             +DN   EV+DLNDD+E    +++D   +Q+KQ K  KRKTRQ KA
Sbjct: 29  DNRTQAAIARLEALENDNGAIEVIDLNDDEEASLDEDDDLGYLQKKQHKGSKRKTRQAKA 88

Query: 122 LE-KKAARSFMDVLQEANLESLPPHVPTYSRAAVGPPSTSSRRHYCSVCGSTANYTCVRC 180
           LE +KA +SF+++LQEANLESLP HVPTY +AAVGPPS+SSRR++CSVCG  A Y C  C
Sbjct: 89  LEARKAPKSFLELLQEANLESLPSHVPTYLKAAVGPPSSSSRRYFCSVCGYIAGYNCCLC 148

Query: 181 GTRFCSCRCQVIHNDTRCLKFVA 203
           G RFCS RCQ IH DTRC KFVA
Sbjct: 149 GMRFCSIRCQNIHKDTRCQKFVA 171



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.129    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,505,442
Number of extensions: 118904
Number of successful extensions: 787
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 788
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 109
Effective length of database: 8,529,465
Effective search space: 929711685
Effective search space used: 929711685
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)